Merge branch 'main' of https://github.com/fhdsl/DaSL_Collection

resources/collection.tsv

@@ -1,8 +1,8 @@
 name	homepage	html_url	description	topics
-Adv_Reproducibility_in_Cancer_Informatics	https://jhudatascience.org/Adv_Reproducibility_in_Cancer_Informatics	https://github.com/jhudsl/Adv_Reproducibility_in_Cancer_Informatics	This course the second course in a two part series that discusses reproducibility in the context of cancer informatics.	python, r, reproducibility, version-control
-AI_for_Decision_Makers	https://hutchdatascience.org/AI_for_Decision_Makers/	https://github.com/fhdsl/AI_for_Decision_Makers	"This is the series of courses in Fred Hutch DaSL's ""AI for Decision Makers"" specialization on Coursera."	course, hutch-course
+AI_for_Decision_Makers	https://hutchdatascience.org/AI_for_Decision_Makers/	https://github.com/fhdsl/AI_for_Decision_Makers	This is the series of courses in Fred Hutch DaSL's ""AI for Decision Makers"" specialization on Coursera.	course, hutch-course
 AI_for_Efficient_Programming	https://hutchdatascience.org/AI_for_Efficient_Programming/	https://github.com/fhdsl/AI_for_Efficient_Programming	DaSL's course on AI skills for efficient programming	artificial-intelligence, chatbot, course, hutch-course, learn-ai, llm, llms, software-learning
-AnVIL_Book_Epigenetics_Intro	https://hutchdatascience.org/AnVIL_Book_Epigenetics_Intro/	https://github.com/fhdsl/AnVIL_Book_Epigenetics_Intro	"An introductory activity for epigenetics, or the idea of ""nature versus nurture"" in genetics. Learners use the UCSC Genome Browser."	anvil, course, epigenetics, human-genomes, module, ucsc-browser
+Adv_Reproducibility_in_Cancer_Informatics	https://jhudatascience.org/Adv_Reproducibility_in_Cancer_Informatics	https://github.com/jhudsl/Adv_Reproducibility_in_Cancer_Informatics	This course the second course in a two part series that discusses reproducibility in the context of cancer informatics.	python, r, reproducibility, version-control
+AnVIL_Book_Epigenetics_Intro	https://hutchdatascience.org/AnVIL_Book_Epigenetics_Intro/	https://github.com/fhdsl/AnVIL_Book_Epigenetics_Intro	An introductory activity for epigenetics, or the idea of ""nature versus nurture"" in genetics. Learners use the UCSC Genome Browser.	anvil, course, epigenetics, human-genomes, module, ucsc-browser
 AnVIL_Book_Getting_Started	https://jhudatascience.org/AnVIL_Book_Getting_Started	https://github.com/jhudsl/AnVIL_Book_Getting_Started	A guide for getting started using AnVIL 	anvil, cloud-computing
 AnVIL_Book_Instructor_Guide	https://jhudatascience.org/AnVIL_Book_Instructor_Guide	https://github.com/jhudsl/AnVIL_Book_Instructor_Guide	A guide for instructors using AnVIL for workshops, lessons, or courses.	anvil, education
 AnVIL_Collection	https://hutchdatascience.org/AnVIL_Collection/	https://github.com/fhdsl/AnVIL_Collection	📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects	content-library, website
@@ -13,14 +13,10 @@ AnVIL_SRA_Data	https://hutchdatascience.org/AnVIL_SRA_Data/	https://github.com/f
 AnVIL_Template	https://jhudatascience.org/AnVIL_Template/	https://github.com/jhudsl/AnVIL_Template	An OTTR spinoff template for creating AnVIL content	anvil, template
 AnVIL_Urban_Genomics_PCA	https://hutchdatascience.org/AnVIL_Urban_Genomics_PCA/	https://github.com/fhdsl/AnVIL_Urban_Genomics_PCA	Lab module and lectures for exploring PCA using feral pigeon populations	anvil, genomics, pca, urban-data-science
 AnVIL_WDLs	https://github.com/fhdsl/AnVIL_WDLs/tree/main	https://github.com/fhdsl/AnVIL_WDLs	Raw WDL workflow files for use on AnVIL and other platforms	anvil, genomics, wdl, workflows
-ari	https://jhudatascience.org/ari/	https://github.com/jhudsl/ari	:dancers: The Automated R Instructor	edtech-software
 Baltimore_Community_Course	https://jhudatascience.org/Baltimore_Community_Course	https://github.com/jhudsl/Baltimore_Community_Course	Baltimore Community Data Science Course at JHSPH through partnership with SOURCE	community-outreach, course, data-science
 Choosing_Genomics_Tools	http://hutchdatascience.org/Choosing_Genomics_Tools/	https://github.com/fhdsl/Choosing_Genomics_Tools	A course to help learners find resources and tools to help them process and interpret their genomic data	
-code_review	https://hutchdatascience.org/code_review/	https://github.com/fhdsl/code_review	A repository with tips about code review and implementing it in a lab	codereview, fhdasl, hutch-course, training
 Computing_for_Cancer_Informatics	https://jhudatascience.org/Computing_for_Cancer_Informatics	https://github.com/jhudsl/Computing_for_Cancer_Informatics	The course covers the key underlying principles and concepts in computing. It covers concrete discussions of the differences between cloud and local computing. The course highlights a number of computing options and etiquette for using shared resources.	computing, informatics
-conrad	http://hutchdatascience.org/conrad/	https://github.com/fhdsl/conrad	Client for the Microsoft Cognitive Services Text to Speech REST API (reboot of the mscstts package)	azure, r, text-to-speech, tts
 DaSL_Collection	https://hutchdatascience.org/DaSL_Collection	https://github.com/fhdsl/DaSL_Collection	📚 An auto-generating library of all Data Science Lab Github-based content	content-library, website
-dasl-snack-github	http://hutchdatascience.org/dasl-snack-github/	https://github.com/fhdsl/dasl-snack-github	"A DaSL training ""snack"" covering the benefits and basics of using Git and GitHub to support your biomedical data science work. "	hutch-course
 Data-Wrangling	https://hutchdatascience.org/Data-Wrangling/	https://github.com/fhdsl/Data-Wrangling	UW Summer Institute in Statistics: Data Wrangling in R	data-science, data-wrangling, r-programming, r-stats, tidyverse
 DataTrail: 12_package	https://datatrail-jhu.github.io/12_package/	https://github.com/datatrail-jhu/12_package	How to Create an R package Course	data-science, package-development, r-package
 DataTrail: DataTrail	https://datatrail-jhu.github.io/DataTrail/	https://github.com/datatrail-jhu/DataTrail	The re-organized DataTrail curriculum https://www.datatrail.org/	
@@ -29,11 +25,11 @@ DataTrail: rgoogleclassroom	https://datatrail-jhu.github.io/rgoogleclassroom/	ht
 DataTrail: scn	http://swirlstats.com/scn/	https://github.com/datatrail-jhu/scn	:school_satchel: The swirl Course Network - A Repository for swirl Courses	
 Documentation_and_Usability	https://jhudatascience.org/Documentation_and_Usability/	https://github.com/jhudsl/Documentation_and_Usability	A course to cover the basics of creating documentation and tutorials to maximize the usability of informatics tools	documentation, software-development
 Ethical_Data_Handling_for_Cancer_Research	https://hutchdatascience.org/Ethical_Data_Handling_for_Cancer_Research/	https://github.com/fhdsl/Ethical_Data_Handling_for_Cancer_Research	This course is designed to help researchers and investigators understand the key principles of data management from an ethics, privacy, security, usability and discoverability perspective. 	data, ethics, privacy, research, security
-FH_Cluster_101	https://leanpub.com/courses/fredhutch/fredhutchcluster101	https://github.com/fhdsl/FH_Cluster_101	This course introduces users to the Fred Hutch Cluster. It will lead users through account creation, using the terminal, connecting to the cluster, submitting jobs, and transferring files. Available in both web and Leanpub formats.	command-line, computing-cluster, course, hpcc, hutch-course
 FH_Cluster201	https://hutchdatascience.org/FH_Cluster201/	https://github.com/fhdsl/FH_Cluster201	An emerging course for effective use of FH Computing. 	
-FH_letterhead	https://github.com/fhdsl/FH_letterhead	https://github.com/fhdsl/FH_letterhead	A LaTeX template for Fred Hutch letterhead	latex, letterhead, template
+FH_Cluster_101	https://leanpub.com/courses/fredhutch/fredhutchcluster101	https://github.com/fhdsl/FH_Cluster_101	This course introduces users to the Fred Hutch Cluster. It will lead users through account creation, using the terminal, connecting to the cluster, submitting jobs, and transferring files. Available in both web and Leanpub formats.	command-line, computing-cluster, course, hpcc, hutch-course
 FH_WDL101_Cromwell	https://hutchdatascience.org/FH_WDL101_Cromwell/	https://github.com/fhdsl/FH_WDL101_Cromwell	An introduction to using Cromwell and WDL at the Fred Hutch	course, fredhutch, hutch-course, wdl
 FH_WDL102_Workflows	https://hutchdatascience.org/FH_WDL102_Workflows/	https://github.com/fhdsl/FH_WDL102_Workflows	Info about designing, optimizing and deploying your own WDL workflows	course, fredhutch, openwdl, wdl, workflows
+FH_letterhead	https://github.com/fhdsl/FH_letterhead	https://github.com/fhdsl/FH_letterhead	A LaTeX template for Fred Hutch letterhead	latex, letterhead, template
 GDSCN_Book_SARS_Galaxy_on_AnVIL	https://jhudatascience.org/GDSCN_Book_SARS_Galaxy_on_AnVIL/	https://github.com/jhudsl/GDSCN_Book_SARS_Galaxy_on_AnVIL	Lab module and lectures for variant detection in SARS-CoV-2 using Galaxy	anvil, gdscn, genomics, module, sars-cov-2, variant-detection
 GDSCN_Book_Statistics_for_Genomics_Differential_Expression	https://jhudatascience.org/GDSCN_Book_Statistics_for_Genomics_Differential_Expression/	https://github.com/jhudsl/GDSCN_Book_Statistics_for_Genomics_Differential_Expression	A set of lab modules for an introduction to differential gene expression	anvil, cloud-computing, gdscn, gene-expression
 GDSCN_Book_Statistics_for_Genomics_PCA	https://jhudatascience.org/GDSCN_Book_Statistics_for_Genomics_PCA/	https://github.com/jhudsl/GDSCN_Book_Statistics_for_Genomics_PCA	A set of lab modules for PCA analysis	anvil, gdscn, genomics
@@ -43,20 +39,24 @@ GDSCN_Book_swirl	https://jhudatascience.org/GDSCN_Book_swirl/	https://github.com
 GDSCN_SARS_RStudio_on_AnVIL	https://hutchdatascience.org/GDSCN_SARS_RStudio_on_AnVIL/	https://github.com/fhdsl/GDSCN_SARS_RStudio_on_AnVIL	Lab module and lectures for identifying phylogenetic history of SARS variants using R	anvil, gdscn, phylogenetic-analysis, sars-cov-2
 GitHub_Automation_for_Scientists	http://hutchdatascience.org/GitHub_Automation_for_Scientists/	https://github.com/fhdsl/GitHub_Automation_for_Scientists	A course that introduces Github actions to developers of scientific worklflows and software	
 Informatics_Research_Leadership	https://jhudatascience.org/Informatics_Research_Leadership/	https://github.com/jhudsl/Informatics_Research_Leadership	Guidance on supporting multidisciplinary teams in cancer informatics. 	diversity, informatics, leadership
+NIH_Data_Sharing	https://hutchdatascience.org/NIH_Data_Sharing/	https://github.com/fhdsl/NIH_Data_Sharing	Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy.	data-management, data-sharing, grant-proposals, hutch-course, nih
+OTTR_Template	https://www.ottrproject.org/	https://github.com/jhudsl/OTTR_Template	OTTR: Open-source Tools for Training Resources. This is template repository for creating online courses to be published on multiple platforms. See here: https://jhudatascience.org/OTTR_Template/ for a rendered version.	edtech-software, education, online-learning, open-source
+OTTR_Template_Website	https://jhudatascience.org/OTTR_Template_Website/	https://github.com/jhudsl/OTTR_Template_Website	Template to create websites with checks for broken urls and spelling, as well as automated rendering. This is an offshoot of the OTTR_Template (https://github.com/jhudsl/OTTR_Template).	edtech-software
+Overleaf_and_LaTeX_for_Scientific_Articles	https://hutchdatascience.org/Overleaf_and_LaTeX_for_Scientific_Articles/	https://github.com/fhdsl/Overleaf_and_LaTeX_for_Scientific_Articles	The course covers basic information about why LaTeX can be useful, how to get started in Overleaf using LaTeX with a template, how to work with a team on Overleaf, and what to do when you encounter problems.	latex, overleaf, scientific-publications
+Reproducibility_in_Cancer_Informatics	https://jhudatascience.org/Reproducibility_in_Cancer_Informatics/	https://github.com/jhudsl/Reproducibility_in_Cancer_Informatics	This course discusses reproducibility and replicability in the context of cancer informatics. 	data-science, informatics, python, r, reproducibility
+SeattleStatSummer_R	https://hutchdatascience.org/SeattleStatSummer_R/	https://github.com/fhdsl/SeattleStatSummer_R	A 4-day introduction to R programming, focused on Fred Hutch Research Interns	beginner, beginner-friendly, data-analysis, data-science, introduction-to-programming, r-programming, tidyverse
+Using_Leanpub	https://hutchdatascience.org/Using_Leanpub/	https://github.com/fhdsl/Using_Leanpub	A gentle introduction to Leanpub	course, education, leanpub
+ari	https://jhudatascience.org/ari/	https://github.com/jhudsl/ari	:dancers: The Automated R Instructor	edtech-software
+code_review	https://hutchdatascience.org/code_review/	https://github.com/fhdsl/code_review	A repository with tips about code review and implementing it in a lab	codereview, fhdasl, hutch-course, training
+conrad	http://hutchdatascience.org/conrad/	https://github.com/fhdsl/conrad	Client for the Microsoft Cognitive Services Text to Speech REST API (reboot of the mscstts package)	azure, r, text-to-speech, tts
+dasl-snack-github	http://hutchdatascience.org/dasl-snack-github/	https://github.com/fhdsl/dasl-snack-github	A DaSL training ""snack"" covering the benefits and basics of using Git and GitHub to support your biomedical data science work. 	hutch-course
 intro_to_r	https://jhudatascience.org/intro_to_r/	https://github.com/jhudsl/intro_to_r	A 2-week introduction to R programming course, with a focus on public health datasets	beginner, beginner-friendly, beginner-programming, course, public-health, r-programming, tidyverse
 itn-metric	http://hutchdatascience.org/itn-metric/	https://github.com/fhdsl/itn-metric	Analyze ITCR metrics using {metricminer}	
 jhudsl.github.io	https://jhudatascience.org	https://github.com/jhudsl/jhudsl.github.io	source code for the JHU Data Science Lab website	website
 metricminer	https://hutchdatascience.org/metricminer/	https://github.com/fhdsl/metricminer	R package that digs up data that matters from APIs, making it dashboard-ready	edtech-software
 metricminer.org	http://www.metricminer.org/	https://github.com/fhdsl/metricminer.org	A website for metricminer	
-NIH_Data_Sharing	https://hutchdatascience.org/NIH_Data_Sharing/	https://github.com/fhdsl/NIH_Data_Sharing	Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy.	data-management, data-sharing, grant-proposals, hutch-course, nih
-OTTR_Template	https://www.ottrproject.org/	https://github.com/jhudsl/OTTR_Template	OTTR: Open-source Tools for Training Resources. This is template repository for creating online courses to be published on multiple platforms. See here: https://jhudatascience.org/OTTR_Template/ for a rendered version.	edtech-software, education, online-learning, open-source
-OTTR_Template_Website	https://jhudatascience.org/OTTR_Template_Website/	https://github.com/jhudsl/OTTR_Template_Website	Template to create websites with checks for broken urls and spelling, as well as automated rendering. This is an offshoot of the OTTR_Template (https://github.com/jhudsl/OTTR_Template).	edtech-software
 ottrpal	https://jhudatascience.org/ottrpal/	https://github.com/jhudsl/ottrpal	Tools for converting OTTR courses into Leanpub or Coursera courses :otter:	edtech-software
 ottrproject.org	https://www.ottrproject.org/	https://github.com/jhudsl/ottrproject.org	This repo publishes ottrproject.org	
-Overleaf_and_LaTeX_for_Scientific_Articles	https://hutchdatascience.org/Overleaf_and_LaTeX_for_Scientific_Articles/	https://github.com/fhdsl/Overleaf_and_LaTeX_for_Scientific_Articles	The course covers basic information about why LaTeX can be useful, how to get started in Overleaf using LaTeX with a template, how to work with a team on Overleaf, and what to do when you encounter problems.	latex, overleaf, scientific-publications
 personas	http://hutchdatascience.org/personas	https://github.com/fhdsl/personas	Where RDI curates the DaSL Data Science Personas	data-science, personas, training
-Reproducibility_in_Cancer_Informatics	https://jhudatascience.org/Reproducibility_in_Cancer_Informatics/	https://github.com/jhudsl/Reproducibility_in_Cancer_Informatics	This course discusses reproducibility and replicability in the context of cancer informatics. 	data-science, informatics, python, r, reproducibility
-SeattleStatSummer_R	https://hutchdatascience.org/SeattleStatSummer_R/	https://github.com/fhdsl/SeattleStatSummer_R	A 4-day introduction to R programming, focused on Fred Hutch Research Interns	beginner, beginner-friendly, data-analysis, data-science, introduction-to-programming, r-programming, tidyverse
 text2speech	http://jhudatascience.org/text2speech/	https://github.com/jhudsl/text2speech	Text to Speech	edtech-software, speech-synthesis, text-to-speech, tts, voice
 tidyversecourse	http://jhudatascience.org/tidyversecourse/	https://github.com/jhudsl/tidyversecourse	Tidyverse Skills for Data Science in R	r, tidyverse
-Using_Leanpub	https://hutchdatascience.org/Using_Leanpub/	https://github.com/fhdsl/Using_Leanpub	A gentle introduction to Leanpub	course, education, leanpub