thesis-packages.tex

% -*- mode:LaTex; mode:visual-line; mode:flyspell; fill-column:75-*-
% All packages used in this thesis.

\usepackage{microtype}
\usepackage{graphicx}
\usepackage{epigraph}
\usepackage[cmex10]{amsmath}
\usepackage{amsfonts}
\usepackage{appendix}
\usepackage[numbers,sort]{natbib}
\usepackage{setspace}
\usepackage{layout}
\usepackage[subfigure]{tocloft}  % Set TOC options.

% For plots
\usepackage{pgfplots}
\usepackage{pgfplotstable}
\usepackage{tikz}
\pgfplotsset{compat=1.9}
\usetikzlibrary{positioning}
\usetikzlibrary{backgrounds}
\usetikzlibrary{calc}
\usepgfplotslibrary{colorbrewer}  % provided by local file.
\usepgfplotslibrary{statistics}

% Enable externalized diagrams (for final copy).
%\usetikzlibrary{external}
%\tikzexternalize[prefix=externalize-tikz/]

\usepackage[format=hang]{subfig}  % Do not include caption package in here.
\usepackage{xcolor}  % Get extra colors.
\usepackage{algorithm}
\usepackage{algpseudocode} % algorithmicx
\usepackage{ctable}
\usepackage{multirow}

%\usepackage{todonotes}  % This package is slow to include.
\usepackage{xspace} % macros with trailing spaces
\usepackage{siunitx}
\usepackage[raggedright]{titlesec}  % Prevent line breaks in section titles.

% ``float'' algorithms
\usepackage{float}
\newfloat{algorithm}{tbp}{lop}

% Colors for links (except TOC -- all black).
\colorlet{documentLinkColor}{blue}
\colorlet{documentCitationColor}{black!80}
\usepackage[backref,
        pageanchor=true,
        plainpages=false,
        pdfpagelabels,
        bookmarks,
        bookmarksnumbered,
]{hyperref}
\hypersetup{
     colorlinks = true,
     citecolor = documentCitationColor,
     linkcolor = documentLinkColor,
     urlcolor = documentLinkColor,
}

% Enable capitalized references. Use this last.
\usepackage[nameinlink]{cleveref}