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OpenPipeline

Extensible single cell analysis pipelines for reproducible and large-scale single cell processing using Viash and Nextflow.

The provided pipelines are built using the Viash framework on top of the nextflow workflow system. For more information on Nextflow please visit the Nextflow github page and the Nextflow read the docs page.

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  • Python 69.1%
  • Shell 14.0%
  • Nextflow 13.4%
  • R 3.0%
  • Common Workflow Language 0.5%