pyproject.toml

[build-system]
requires = ["hatchling>=1.6"]
build-backend = "hatchling.build"

[project]
name = "mcBERT_data2vec"
version = "0.1.0"
description = "Fork of mcBERT - patient-level single-cell representation with data2vec"
readme = "README.md"
requires-python = ">=3.8"
license = { text = "MIT" }
keywords = ["single-cell", "RNA-seq", "transformers", "data2vec", "mcBERT"]
authors = [
  { name = "Your Name", email = "you@example.com" }
]
classifiers = [
  "Development Status :: 3 - Alpha",
  "Programming Language :: Python :: 3",
  "License :: OSI Approved :: MIT License"
]
dependencies = [
  # ============= Updated dependencies from requirements.txt =============
  "matplotlib==3.9.2",
  "numpy==1.23.0",
  "omegaconf==2.3.0",
  "pandas==2.2.3",
  "pytorch_metric_learning==2.6.0",
  "scanpy==1.10.3",
  "scikit_learn==1.5.2",
  "seaborn==0.13.2",
  "torch<=2.5.1",
  "tqdm==4.66.5",
  "transformers==4.46.1",
  "umap==0.1.1",
  "tensorboard==2.18.0",
]

[tool.hatch.metadata]
description-file = "README.md"

# Tells hatchling how to treat your source layout. 
# If your code is in a top-level folder "mcBERT/" and "data2vec/", you might do:
[tool.hatch.build.targets.wheel]
include = [
  "mcBERT/**/*",
  "data2vec/**/*",
  "LICENSE",
  "README.md",
]