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fansalon · Jul 1, 2021 · 2d74af8 · 2d74af8
1 parent 6e392ca
commit 2d74af8
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/TEspeX.py b/TEspeX.py
@@ -55,11 +55,11 @@ def checkSampleFile(sfile,paired):
       # check the expected number of fq is reported (2 if PE,1 if SE)
       if paired == "T":
         if len(line) != 2:
-          print("ERROR: --paired T is specified but the --sample file contains only 1 column at line %s" % (str(ct)))
+          print("ERROR: --paired T is specified therefore 2 columns are expected in the --sample file. However, %s are detected at line %s" % (str(len(line)),str(ct)))
           sys.exit()
       else:
         if len(line) != 1:
-          print("ERROR: --paired F is specified but the --sample file does not contain only 1 column at line %s" % (str(ct)))
+          print("ERROR: --paired F is specified therefore 1 column is expected in the --sample file. However, %s are detected at line %s" % (str(len(line)),str(ct)))
           sys.exit()
       for ln in line:
         # check is full path

diff --git a/wrapper_slurm.py b/wrapper_slurm.py
@@ -54,11 +54,11 @@ def checkSampleFile(sfile,paired):
       # check the expected number of fq is reported (2 if PE,1 if SE)
       if paired == "T":
         if len(line) != 2:
-          print("ERROR: --paired T is specified but the --sample file contains only 1 column at line %s" % (str(ct)))
+          print("ERROR: --paired T is specified therefore 2 columns are expected in the --sample file. However, %s are detected at line %s" % (str(len(line)),str(ct)))
           sys.exit()
       else:
         if len(line) != 1:
-          print("ERROR: --paired F is specified but the --sample file does not contain only 1 column at line %s" % (str(ct)))
+          print("ERROR: --paired F is specified therefore 1 column is expected in the --sample file. However, %s are detected at line %s" % (str(len(line)),str(ct)))
           sys.exit()
       for ln in line:
         # check is full path