From 10d3c16842013ab1cf1f5ae69bcaf6bd8739b343 Mon Sep 17 00:00:00 2001 From: Qianqian Fang Date: Thu, 23 Jan 2025 23:10:09 -0500 Subject: [PATCH] [doc] trim help info longer than 80 char --- src/mcx_utils.c | 28 ++++++++++++++-------------- 1 file changed, 14 insertions(+), 14 deletions(-) diff --git a/src/mcx_utils.c b/src/mcx_utils.c index 683210c3..5967455d 100644 --- a/src/mcx_utils.c +++ b/src/mcx_utils.c @@ -5590,9 +5590,9 @@ where possible parameters include (the first value in [*|*] is the default)\n\ {[f:mua]}; mus/g/n from medium type 1\n\ 102 or muamus_half: 2x 16bit float for mua/mus\n\ {[h:mua][h:mus]}; g/n from medium type 1\n\ - 103 or asgn_byte: 4x byte gray-levels for mua/s/g/n\n\ + 103 or asgn_byte: 4-byte gray-levels for mua/s/g/n\n\ {[mua][mus][g][n]}; 0-255 mixing prop types 1&2\n\ - 104 or muamus_short: 2x short gray-levels for mua/s\n\ + 104 or muamus_short: 2-short gray-levels for mua/s\n\ {[s:mua][s:mus]}; 0-65535 mixing prop types 1&2\n\ when formats 99 or 102 is used, the mua/mus values in the input volume\n\ binary data must be pre-scaled by voxel size (unitinmm) if it is not 1.\n\ @@ -5617,7 +5617,7 @@ where possible parameters include (the first value in [*|*] is the default)\n\ 16 X output exit position (3)\n\ 32 V output exit direction (3)\n\ 64 W output initial weight (1)\n\ - combine multiple items by using a string, or add selected numbers together\n\ + combine multiple items by using a string,or add selected numbers together\n\ by default, mcx only saves detector ID and partial-path data\n\ -x [0|1] (--saveexit) 1 to save photon exit positions and directions\n\ setting -x to 1 also implies setting '-d' to 1.\n\ @@ -5625,7 +5625,7 @@ where possible parameters include (the first value in [*|*] is the default)\n\ -X [0|1] (--saveref) 1 to save diffuse reflectance at the air-voxels\n\ right outside of the domain; if non-zero voxels\n\ appear at the boundary, pad 0s before using -X\n\ - -m [0|1] (--momentum) 1 to save photon momentum transfer,0 not to save.\n\ + -m [0|1] (--momentum) 1 to save photon momentum transfer,0 not to save\n\ same as adding 'M' to the -w flag\n\ -q [0|1] (--saveseed) 1 to save photon RNG seed for replay; 0 not save\n\ -M [0|1] (--dumpmask) 1 to dump detector volume masks; 0 do not save\n\ @@ -5652,8 +5652,8 @@ where possible parameters include (the first value in [*|*] is the default)\n\ 3 lzip: lzip format (high compression,very slow)\n\ 4 lzma: lzma format (high compression,very slow)\n\ 5 lz4: LZ4 format (low compression,extrem. fast)\n\ - 6 lz4hc: LZ4HC format (moderate compression,fast)\n\ - --dumpjson [-,0,1,'file.json'] export all settings, including volume data using\n\ + 6 lz4hc: LZ4HC format(moderate compression,fast)\n\ + --dumpjson [-,0,1,'file.json'] export all settings,including volume data using\n\ JSON/JData (https://neurojson.org) format for\n\ easy sharing; can be reused using -f\n\ if followed by nothing or '-', mcx will print\n\ @@ -5671,22 +5671,22 @@ where possible parameters include (the first value in [*|*] is the default)\n\ == Debug options ==\n" S_RESET"\ -D [0|int] (--debug) print debug information (you can use an integer\n\ or or a string by combining the following flags)\n\ - -D [''|RMPT] 1 R debug RNG\n\ - /case insensitive/ 2 M store photon trajectory info\n\ - 4 P print progress bar\n\ - 8 T save trajectory data only, disable flux/detp\n\ - combine multiple items by using a string, or add selected numbers together\n\ + -D [''|RMPT] 1 R debug RNG\n\ + /case insensitive/ 2 M store photon trajectory info\n\ + 4 P print progress bar\n\ + 8 T save trajectory data only, disable flux/detp\n\ + combine multiple items by using a string,or add selected numbers together\n\ \n"S_BOLD S_CYAN"\ == Additional options ==\n" S_RESET"\ --root [''|string] full path to the folder storing the input files\n\ --gscatter [1e9|int] after a photon completes the specified number of\n\ scattering events, mcx then ignores anisotropy g\n\ and only performs isotropic scattering for speed\n\ - --srcid [0|-1,0,1,2,..] -1 simulate multi-source separately;0 all sources\n\ - together; a positive integer runs a single source\n\ + --srcid [0|-1,0,1,2,..] -1 simulate multi-source separately;0 all sources\n\ + together;a positive integer runs a single source\n\ --internalsrc [0|1] set to 1 to skip entry search to speedup launch\n\ --trajstokes [0|1] set to 1 to save Stokes IQUV in trajectory data\n\ - --maxvoidstep [1000|int] maximum distance (in voxel unit) of a photon that\n\ + --maxvoidstep [1000|int] max distance (in voxel unit) of a photon that\n\ can travel before entering the domain, if \n\ launched outside (i.e. a widefield source)\n\ --maxjumpdebug [10000000|int] when trajectory is requested (i.e. -D M),\n\