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infair-research/bdbag (press backspace or delete to remove)I ve been happily using bdbag to materialise URLs into datasets and I m now hoping to do the same with iRODS paths. This
functionality seems to have been developed in the iRODS-integration branch some ...
AliceSLee
- 3
- Opened on Oct 24, 2024
- #62
keychain.json
We are trying to download the Velmeshev files (https://assets.nemoarchive.org/dat-3ah9h9x), using BDBag. We created a
google cloud account, but are having issues with the json configuration ...
errrna
- 5
- Opened on Jun 27, 2024
- #61
I m trying to configure bdbag to fetch via Globus for Whole Tale bags that have been downloaded to a user s local
system. Looking at https://github.com/fair-research/bdbag/blob/master/doc/config.md, I ...
craig-willis
- Opened on Feb 24, 2022
- #50
The following fetch transport handlers do not have unit tests:
- [ ] fetch_globus.py
- [ ] fetch_boto3.py
Historically, this was due to the complexity of testing the network behaviors inherent in ...
enhancement
unit tests
mikedarcy
- Opened on Feb 11, 2022
- #49
Currently, bdbag seems to be listed as compatible with python 3.5 (along with other versions. However, in our recent
experience https://github.com/geneontology/pipeline/issues/247, this no longer seems ...
dependencies
kltm
- 6
- Opened on Sep 15, 2021
- #47
Add support for multiple concurrent fetch operations. This can significantly speed up transfers when enough bandwidth is
available. At a minimum, support parallelism in the HTTP/FTP fetch handlers. Investigate ...
enhancement
- Opened on May 20, 2021
- #44
I need to extract only a couple of files from a big bag, but I cannot use a simple =* or $* expression to select all the
relevant files. From a quick check it looks pretty straight forward to add also ...
alpae
- 4
- Opened on Mar 19, 2021
- #41
Look into replacing runtime usage of pkg_resources with importlib. This will simplify runtime dependencies, especially
in frozen (e.g., pyinstaller, cx_freeze) environments.
enhancement
- Opened on Feb 26, 2021
- #40
The code changes for the 1.6.0 release are complete. I d like to park here for a bit and add some time for final QA
passes to be done outside of Travis and unit tests on supported platforms.
- 1
- Opened on Feb 2, 2021
- #39
The current set of fetch transports is basically hard-wired into the code, whereby the only way to add to (or override)
the default set of handlers is to modify the bdbag.fetch.transports module source ...
enhancement
- 1
- Opened on Oct 18, 2019
- #37
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