add data

.github/ISSUE_TEMPLATE/add.md

@@ -9,16 +9,53 @@ assignees: ''
 Thanks for taking the time to fill out this addition request!
 
 ### Required fields
-Please provide a unique ID for the required resource:
 
-`<Add your unique ID here>`  
-_Example: `MY_NEW_RESOURCE`_
+#### BioChemicalEntity
+- Chemical name: 
+- Label:
+- biochemidentitiers
+    - CAS number:
+    - inCHi key:
+    - CHEBI key:
+    - Other identifiers:
+        - Identifier name:
+        - Identifier key:
+- Suggestion for unique marker name (all lowercase and no spaces):
+- parent compound:
+    - parent compound name:
+    - biochemidentitiers
+        - CAS number:
+        - inCHi key:
+        - CHEBI key:
+- translations
+    - name:
+    - language:
+
+### Additional metadata fields:
+- This information is required to ensure a proper Quality Control of the data. 
+- Please provide the values below new biomarker measured in the matrix that it will be provided in:
+    - matrix:
+    - unit:
+    - p50 value:
+    - p50 value source:
+    - p90 value:
+    - p90 value source:
+
+
+#### Matrix (see [matrix-vocabulary](https://github.com/eu-parc/matrix-vocabulary))
+- name:
+
+#### Indicator
+- type: (select one)
+    - [ ] Exposure marker
+    - [ ] Effect marker
+    - [ ] General property
+- unit:
 
 ### Existence Check
-- [ ] I have checked that this new resource is not yet part of the vocabulary.
+- [ ] I have checked that I am not inventing a new Matrix.
+- [ ] I have checked that this Biomarker is not yet part of the vocabulary.
 
-### Uniqueness Check
-- [ ] I have checked that the unique identifier of this resource is indeed unique.
 
 ---
 

.github/workflows/publish.yml

@@ -9,11 +9,12 @@ on:
 jobs:
     publish-vocabulary:
         if: github.repository != 'eu-parc/vocabulary-template'
-        uses: eu-parc/voc2skosmos-workflow/.github/workflows/csv2skos.yml@main
+        uses: eu-parc/voc2skosmos-workflow/.github/workflows/yml2skos.yml@main
         with:
             ref: ${{ github.ref }}
             namespace: http://www.placeholder.com/
             namespace_label: placeholder
-            mappings_file: rules/mappings.yarrr.yml
+            linkml_schema: schema/biochementity.linkml.yml
+            data: data/data.yml
         secrets:
             token: ${{ secrets.GITHUB_TOKEN }}