Merge branch 'release/8.6.0' into main

.github/workflows/develop-nightly.yml

@@ -0,0 +1,112 @@
+name: Develop - Nightly
+
+on:
+  schedule:
+    - cron:  '30 7 * * *'
+  workflow_dispatch:
+
+jobs:
+  nuopc-test:
+    name: ${{matrix.config.name}}
+    runs-on: ${{matrix.config.os}}
+    strategy:
+      matrix:
+        config:
+        - {
+            name: "Ubuntu (gfortran, openmpi)",
+            os: ubuntu-latest,
+            compiler: gfortran,
+            comm: openmpi
+          }
+    steps:
+    - uses: actions/checkout@v3
+    - name: Library Directory
+      run: |
+        export STACK_ROOT=${HOME}/stack
+        mkdir -p ${STACK_ROOT}/{include,lib,lib64,bin}
+        echo "STACK_ROOT=${STACK_ROOT}" >> $GITHUB_ENV
+        export LD_LIBRARY_PATH=${STACK_ROOT}/lib64:${STACK_ROOT}/lib:${LD_LIBRARY_PATH}
+        echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" >> $GITHUB_ENV
+        echo "CPPFLAGS=-I${STACK_ROOT}/include" >> $GITHUB_ENV
+        echo "LDFLAGS=-L${STACK_ROOT}/lib" >> $GITHUB_ENV
+        echo "${STACK_ROOT}/bin" >> $GITHUB_PATH
+    - name: Cache Libraries
+      id: cache-libraries
+      uses: actions/cache@v3
+      with:
+        path: ${{env.STACK_ROOT}}
+        key: develop-nightly-${{matrix.config.os}}-${{matrix.config.compiler}}-${{matrix.config.comm}}
+    - name: Install OPENMPI
+      if: ${{matrix.config.comm}} == 'openmpi'
+      env:
+        CACHE_HIT: ${{steps.cache-libraries.outputs.cache-hit}}
+      run: |
+        if [[ "$CACHE_HIT" != 'true' ]]; then
+          OPENMPI_URL="https://download.open-mpi.org/release/open-mpi/v4.0/openmpi-4.0.3.tar.gz"
+          mkdir ${{runner.temp}}/openmpi
+          cd ${{runner.temp}}/openmpi
+          curl -L $OPENMPI_URL | tar --strip-components=1 -xz
+          ./configure --prefix=${{env.STACK_ROOT}}
+          make -j 2 install
+        fi
+        echo "CC=${{env.STACK_ROOT}}/bin/mpicc" >> $GITHUB_ENV
+        echo "CXX=${{env.STACK_ROOT}}/bin/mpicxx" >> $GITHUB_ENV
+        echo "F77=${{env.STACK_ROOT}}/bin/mpif77" >> $GITHUB_ENV
+        echo "F90=${{env.STACK_ROOT}}/bin/mpif90" >> $GITHUB_ENV
+        echo "FC=${{env.STACK_ROOT}}/bin/mpifort" >> $GITHUB_ENV
+        echo "OPENMPI_ROOT=${{env.STACK_ROOT}}" >> $GITHUB_ENV
+    - name: Install HDF5
+      env:
+        CACHE_HIT: ${{steps.cache-libraries.outputs.cache-hit}}
+      run: |
+        if [[ "$CACHE_HIT" != 'true' ]]; then
+          HDF5_URL="https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2.tar.gz"
+          mkdir ${{runner.temp}}/hdf5
+          cd ${{runner.temp}}/hdf5
+          curl -L $HDF5_URL | tar --strip-components=2 -xz
+          ./configure --enable-fortran --prefix=${{env.STACK_ROOT}}
+          make -j 2 install
+        fi
+        echo "HDF5_ROOT=${{env.STACK_ROOT}}" >> $GITHUB_ENV
+    - name: Install NetCDF-C
+      env:
+        CACHE_HIT: ${{steps.cache-libraries.outputs.cache-hit}}
+      run: |
+        if [[ "$CACHE_HIT" != 'true' ]]; then
+          NETCDF_URL="https://github.com/Unidata/netcdf-c/archive/v4.9.0.tar.gz"
+          mkdir ${{runner.temp}}/netcdf-c
+          cd ${{runner.temp}}/netcdf-c
+          curl -L $NETCDF_URL | tar --strip-components=1 -xz
+          ./configure --enable-netcdf-4 --disable-dap --prefix=${{env.STACK_ROOT}}
+          make -j 2 install
+        fi
+        echo "NETCDF_ROOT=${{env.STACK_ROOT}}" >> $GITHUB_ENV
+    - name: Install NetCDF-Fortran
+      env:
+        CACHE_HIT: ${{steps.cache-libraries.outputs.cache-hit}}
+      run: |
+        if [[ "$CACHE_HIT" != 'true' ]]; then
+          NETCDFF_URL="https://github.com/Unidata/netcdf-fortran/archive/v4.5.4.tar.gz"
+          mkdir ${{runner.temp}}/netcdf-fortran
+          cd ${{runner.temp}}/netcdf-fortran
+          curl -L $NETCDFF_URL | tar --strip-components=1 -xz
+          ./configure --prefix=${{env.STACK_ROOT}}
+          make -j 2 install
+        fi
+        echo "NETCDFF_ROOT=${{env.STACK_ROOT}}" >> $GITHUB_ENV
+    - name: Install ESMF
+      uses: esmf-org/install-esmf-action@v1
+      env:
+        ESMF_COMPILER: ${{matrix.config.compiler}}
+        ESMF_COMM: ${{matrix.config.comm}}
+        ESMF_NETCDF: 'nc-config'
+      with:
+        build-key: 'develop-nightly-${{matrix.config.os}}-${{matrix.config.compiler}}-${{matrix.config.comm}}'
+        version: 'develop'
+        rebuild-check: quick
+        esmpy: false
+        cache: true
+    - name: NUOPC Tests
+      run: |
+        export TOOLRUN="--oversubscribe"
+        ./testProtos.sh

.gitignore

@@ -356,52 +356,6 @@ AtmOcnScalarProto/esmApp.stdout
 AtmOcnScalarProto/field_ocn_export_adv_sst.nc
 AtmOcnScalarProto/ocn.mod
 AtmOcnScalarProto/ocn.o
-AtmOcnSelectExternalProto/ATM-A/atmA.mk
-AtmOcnSelectExternalProto/ATM-A/atmA.o
-AtmOcnSelectExternalProto/ATM-A/atma.mod
-AtmOcnSelectExternalProto/ATM-B/atmB.mk
-AtmOcnSelectExternalProto/ATM-B/atmB.o
-AtmOcnSelectExternalProto/ATM-B/atmb.mod
-AtmOcnSelectExternalProto/ATM-B/procedure.o
-AtmOcnSelectExternalProto/ATM-C/atmC.mk
-AtmOcnSelectExternalProto/ATM-C/atmC.o
-AtmOcnSelectExternalProto/ATM-C/atmc.mod
-AtmOcnSelectExternalProto/ATM-C/libatmC.a
-AtmOcnSelectExternalProto/ATM-C/procedure.o
-AtmOcnSelectExternalProto/ATM-D/atmD.mk
-AtmOcnSelectExternalProto/ATM-D/atmd.mod
-AtmOcnSelectExternalProto/ATM-D/libatmD.so
-AtmOcnSelectExternalProto/ATM-E/atmE.mk
-AtmOcnSelectExternalProto/ATM-E/atme.mod
-AtmOcnSelectExternalProto/OcnCommon/oceancommon.mod
-AtmOcnSelectExternalProto/OcnCommon/ocnCommon.mk
-AtmOcnSelectExternalProto/OcnCommon/ocnCommon.o
-AtmOcnSelectExternalProto/OcnCommon/subModule1.o
-AtmOcnSelectExternalProto/OcnCommon/subModule2.o
-AtmOcnSelectExternalProto/OcnCommon/submodule1.mod
-AtmOcnSelectExternalProto/OcnCommon/submodule2.mod
-AtmOcnSelectExternalProto/OcnModelA/ocn.mk
-AtmOcnSelectExternalProto/OcnModelA/ocn.o
-AtmOcnSelectExternalProto/OcnModelA/ocna.mod
-AtmOcnSelectExternalProto/OcnModelB/OcnSub/ocnSub.mk
-AtmOcnSelectExternalProto/OcnModelB/OcnSub/ocnSub.o
-AtmOcnSelectExternalProto/OcnModelB/OcnSub/ocnsub.mod
-AtmOcnSelectExternalProto/OcnModelB/ocn.mk
-AtmOcnSelectExternalProto/OcnModelB/ocn.o
-AtmOcnSelectExternalProto/OcnModelB/ocnb.mod
-AtmOcnSelectExternalProto/OcnModelC/OcnSub/ocnSub.mk
-AtmOcnSelectExternalProto/OcnModelC/OcnSub/ocnSub.o
-AtmOcnSelectExternalProto/OcnModelC/OcnSub/ocnsub.mod
-AtmOcnSelectExternalProto/OcnModelC/ocn.mk
-AtmOcnSelectExternalProto/OcnModelC/ocnc.mod
-AtmOcnSelectExternalProto/PET0.ESMF_LogFile
-AtmOcnSelectExternalProto/PET1.ESMF_LogFile
-AtmOcnSelectExternalProto/PET2.ESMF_LogFile
-AtmOcnSelectExternalProto/PET3.ESMF_LogFile
-AtmOcnSelectExternalProto/atmD.so
-AtmOcnSelectExternalProto/atmE.so
-AtmOcnSelectExternalProto/esmApp.stdout
-AtmOcnSelectExternalProto/ocn.so
 AtmOcnSelectProto/PET0.ESMF_LogFile
 AtmOcnSelectProto/PET1.ESMF_LogFile
 AtmOcnSelectProto/PET2.ESMF_LogFile