🐈 Task: Upgrade Dockerfile.pip and Dockerfile.conda

[GemmaTuron]

Summary

The template files to build Docker images of ersilia models, stored in dockerfiles/... need to be refactored:

They have a bunch of copy files operations that might or might not be needed and specially the examples files being copied now are hardcoded into input.csv and output.csv, whereas we are looking at allowing only {api_name}_input.csv and {api_name}_output.csv

Objective(s)

Ensure the files are correct

Documentation

No response

[GemmaTuron]

Related to this, no image can now be pushed as ARM64 because the build fails at this step:
buildx failed with: ERROR: failed to solve: process "/dev/.buildkit_qemu_emulator /bin/sh -c apt-get update && apt-cache search libxtst && apt-get install -y libfontconfig1 libxrender1 libxtst6 && apt-get clean && rm -rf /var/lib/apt/lists/*" did not complete successfully: exit code: 100

Since this is in all dockerfiles, it will consistently fail regardless of the models. Is this something we really need?

[GemmaTuron]

Hi @miquelduranfrigola

Your fix does not work on ARM:

#8 30.78 Setting up ucf (3.0043+deb11u2) ...
#8 31.73 debconf: unable to initialize frontend: Dialog
#8 31.74 debconf: (TERM is not set, so the dialog frontend is not usable.)
#8 31.74 debconf: falling back to frontend: Readline
#8 31.74 debconf: unable to initialize frontend: Readline
#8 31.74 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/aarch64-linux-gnu/perl/5.32.1 /usr/local/share/perl/5.32.1 /usr/lib/aarch64-linux-gnu/perl5/5.32 /usr/share/perl5 /usr/lib/aarch64-linux-gnu/perl-base /usr/lib/aarch64-linux-gnu/perl/5.32 /usr/share/perl/5.32 /usr/local/lib/site_perl) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
#8 31.74 debconf: falling back to frontend: Teletype
#8 32.07 Setting up libx11-6:arm64 (2:1.7.2-1+deb11u2) ...
#8 32.08 Setting up libxrender1:arm64 (1:0.9.10-1) ...
#8 32.08 Setting up fontconfig-config (2.13.1-4.2) ...
#8 32.98 debconf: unable to initialize frontend: Dialog
#8 32.98 debconf: (TERM is not set, so the dialog frontend is not usable.)
#8 32.98 debconf: falling back to frontend: Readline
#8 32.98 debconf: unable to initialize frontend: Readline
#8 32.98 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/aarch64-linux-gnu/perl/5.32.1 /usr/local/share/perl/5.32.1 /usr/lib/aarch64-linux-gnu/perl5/5.32 /usr/share/perl5 /usr/lib/aarch64-linux-gnu/perl-base /usr/lib/aarch64-linux-gnu/perl/5.32 /usr/share/perl/5.32 /usr/local/lib/site_perl) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
#8 32.98 debconf: falling back to frontend: Teletype
#8 37.29 Setting up libfontconfig1:arm64 (2.13.1-4.2) ...
#8 37.30 Processing triggers for libc-bin (2.31-13+deb11u11) ...
#8 37.35 qemu: uncaught target signal 11 (Segmentation fault) - core dumped
#8 37.73 Segmentation fault (core dumped)
#8 37.75 qemu: uncaught target signal 11 (Segmentation fault) - core dumped
#8 38.13 Segmentation fault (core dumped)
#8 38.13 dpkg: error processing package libc-bin (--configure):
#8 38.14  installed libc-bin package post-installation script subprocess returned error exit status 139
#8 38.15 Errors were encountered while processing:
#8 38.15  libc-bin
#8 38.30 E: Sub-process /usr/bin/dpkg returned an error code (1)
#8 ERROR: process "/dev/.buildkit_qemu_emulator /bin/sh -c apt-get update &&     ARCH=$(dpkg --print-architecture) &&     if [ \"$ARCH\" = \"amd64\" ] || [ \"$ARCH\" = \"i386\" ]; then         apt-get install -y libfontconfig1 libxrender1 libxtst6;     else         apt-get install -y libfontconfig1 libxrender1;     fi &&     apt-get clean && rm -rf /var/lib/apt/lists/*" did not complete successfully: exit code: 100
------
 > [4/5] RUN apt-get update &&     ARCH=$(dpkg --print-architecture) &&     if [ "$ARCH" = "amd64" ] || [ "$ARCH" = "i386" ]; then         apt-get install -y libfontconfig1 libxrender1 libxtst6;     else         apt-get install -y libfontconfig1 libxrender1;     fi &&     apt-get clean && rm -rf /var/lib/apt/lists/*:
32.98 debconf: unable to initialize frontend: Readline
32.98 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/aarch64-linux-gnu/perl/5.32.1 /usr/local/share/perl/5.32.1 /usr/lib/aarch64-linux-gnu/perl5/5.32 /usr/share/perl5 /usr/lib/aarch64-linux-gnu/perl-base /usr/lib/aarch64-linux-gnu/perl/5.32 /usr/share/perl/5.32 /usr/local/lib/site_perl) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
32.98 debconf: falling back to frontend: Teletype
37.29 Setting up libfontconfig1:arm64 (2.13.1-4.2) ...
37.30 Processing triggers for libc-bin (2.31-13+deb11u11) ...
37.35 qemu: uncaught target signal 11 (Segmentation fault) - core dumped
37.73 Segmentation fault (core dumped)
37.75 qemu: uncaught target signal 11 (Segmentation fault) - core dumped
38.13 Segmentation fault (core dumped)
: Sub-process /usr/bin/dpkg returned an error code (1)
------
Dockerfile:7
--------------------
   6 |     
   7 | >>> RUN apt-get update && \
   8 | >>>     ARCH=$(dpkg --print-architecture) && \
   9 | >>>     if [ "$ARCH" = "amd64" ] || [ "$ARCH" = "i[386](https://github.com/ersilia-os/eos5axz/actions/runs/13590837834/job/37996351022#step:11:392)" ]; then \
  10 | >>>         apt-get install -y libfontconfig1 libxrender1 libxtst6; \
  11 | >>>     else \
  12 | >>>         apt-get install -y libfontconfig1 libxrender1; \
  13 | >>>     fi && \
  14 | >>>     apt-get clean && rm -rf /var/lib/apt/lists/*
  15 |     
--------------------
ERROR: failed to solve: process "/dev/.buildkit_qemu_emulator /bin/sh -c apt-get update &&     ARCH=$(dpkg --print-architecture) &&     if [ \"$ARCH\" = \"amd64\" ] || [ \"$ARCH\" = \"i386\" ]; then         apt-get install -y libfontconfig1 libxrender1 libxtst6;     else         apt-get install -y libfontconfig1 libxrender1;     fi &&     apt-get clean && rm -rf /var/lib/apt/lists/*" did not complete successfully: exit code: 100

[GemmaTuron]

 > [ 5/10] RUN apt-get install -y libfontconfig1:
18.65 debconf: unable to initialize frontend: Readline
18.65 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/aarch64-linux-gnu/perl/5.32.1 /usr/local/share/perl/5.32.1 /usr/lib/aarch64-linux-gnu/perl5/5.32 /usr/share/perl5 /usr/lib/aarch64-linux-gnu/perl-base /usr/lib/aarch64-linux-gnu/perl/5.32 /usr/share/perl/5.32 /usr/local/lib/site_perl) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
18.65 debconf: falling back to frontend: Teletype
23.15 Setting up libfontconfig1:arm64 (2.13.1-4.2) ...
23.15 Processing triggers for libc-bin (2.31-13+deb11u11) ...
23.21 qemu: uncaught target signal 11 (Segmentation fault) - core dumped
23.67 Segmentation fault (core dumped)
23.69 qemu: uncaught target signal 11 (Segmentation fault) - core dumped
24.07 Segmentation fault (core dumped)
: Sub-process /usr/bin/dpkg returned an error code (1)