From 2078e98738607b81285fb73ef55b1e60836c488b Mon Sep 17 00:00:00 2001
From: eric <eric9n@gmail.com>
Date: Fri, 5 Jan 2024 15:08:09 +0800
Subject: [PATCH] =?UTF-8?q?=E4=BC=98=E5=8C=96?=
MIME-Version: 1.0
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---
 README.md                         | 35 +++++++------------------------
 ncbi/Cargo.toml                   | 10 +--------
 ncbi/src/{bin/ncbi.rs => main.rs} |  0
 3 files changed, 9 insertions(+), 36 deletions(-)
 rename ncbi/src/{bin/ncbi.rs => main.rs} (100%)

diff --git a/README.md b/README.md
index b993b88..c4b7cdf 100644
--- a/README.md
+++ b/README.md
@@ -3,38 +3,19 @@
 
 ## 从 NCBI 下载数据
 ```
-cargo run --bin ncbi -- -h
-   Compiling ncbi v0.1.0 (/Users/eric/kraken2-rust/ncbi)
-    Finished dev [unoptimized + debuginfo] target(s) in 0.79s
-     Running `target/debug/ncbi -h`
+$ ./ncbi -h
 ncbi download resource
 
 Usage: ncbi [OPTIONS]
 
 Options:
-  -l, --list                   列出 NCBI 站点上的种类列表信息，实时拉取
-  -d, --database <DATABASE>    构建数据库的目录 [default: lib]
-  -g, --group <GROUP>          从 NCBI 站点上下载某个种类的数据信息，必须是列表中所列名称
-  -c, --check-md5 <CHECK_MD5>  检查文件的 md5 [default: true] [possible values: true, false]
-  -p, --parallel <PARALLEL>    下载时的并行大小 [default: 8]
-  -h, --help                   Print help (see more with '--help')
-  -V, --version                Print version
-
-```
-
-### md5 文件校验
-```
-cargo run --bin ncbi_md5 -- -h
-    Finished dev [unoptimized + debuginfo] target(s) in 0.07s
-     Running `target/debug/ncbi_md5 -h`
-ncbi check genomics file md5sum
-
-Usage: ncbi_md5 [OPTIONS]
-
-Options:
-  -d, --database <DATABASE>  数据库的路径 [default: lib]
-  -g, --group <GROUP>        从 NCBI 站点上下载某个种类的数据信息，必须是列表中所列名称
-      --delete               删除校验错误的文件
+  -l, --list                 列出 NCBI 站点上的种类列表信息，实时拉取
+  -d, --database <DATABASE>  构建数据库的目录 [default: lib]
+  -g, --group <GROUP>        从 NCBI 站点上下载某个种类的数据信息，必须是列表中所列名称，archaea,bacteria,fungi...
+  -m, --md5                  仅检查文件的 md5
+  -t, --threads <THREADS>    下载时的并行大小 [default: 8]
   -h, --help                 Print help (see more with '--help')
   -V, --version              Print version
+
 ```
+
diff --git a/ncbi/Cargo.toml b/ncbi/Cargo.toml
index 21ae5bf..0b69c2b 100644
--- a/ncbi/Cargo.toml
+++ b/ncbi/Cargo.toml
@@ -1,18 +1,10 @@
 [package]
 name = "ncbi"
-version = "0.1.0"
+version = "0.1.1"
 edition = "2021"
 
 # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
 
-[[bin]]
-name = "ncbi"
-path = "src/bin/ncbi.rs"
-
-# [[bin]]
-# name = "ncbi_md5"
-# path = "src/bin/md5.rs"
-
 [dependencies]
 reqwest = { version = "0.11", features = ["stream", "multipart", "gzip"] }
 tokio = { version = "1", features = ["full"] }
diff --git a/ncbi/src/bin/ncbi.rs b/ncbi/src/main.rs
similarity index 100%
rename from ncbi/src/bin/ncbi.rs
rename to ncbi/src/main.rs