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@epiverse-trace

Epiverse-TRACE

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  1. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 43 4

  2. epiparameter epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

    R 33 11

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 18 4

  4. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 16 4

  5. cfr cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    R 13 4

  6. epiCo epiCo Public

    R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

    R 12 1

Repositories

Showing 10 of 59 repositories
  • serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    epiverse-trace/serofoi’s past year of commit activity
    R 18 4 27 5 Updated Feb 2, 2025
  • packagetemplate Public template

    Template of an R package with standard Epiverse-TRACE automation

    epiverse-trace/packagetemplate’s past year of commit activity
    R 7 4 13 (2 issues need help) 3 Updated Feb 1, 2025
  • epiparameterDashboard Public

    Explore the database of epidemiological parameters provided by the {epiparameterDB} package

    epiverse-trace/epiparameterDashboard’s past year of commit activity
    R 0 0 1 2 Updated Feb 1, 2025
  • safeframe Public

    Tagging, validating, and safeguarding data to help harden data pipelines.

    epiverse-trace/safeframe’s past year of commit activity
    R 0 0 7 5 Updated Feb 1, 2025
  • epiparameterDB Public

    Database of epidemiological parameters

    epiverse-trace/epiparameterDB’s past year of commit activity
    R 2 CC0-1.0 1 0 3 Updated Feb 1, 2025
  • epiverse-trace.github.io Public

    Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally

    epiverse-trace/epiverse-trace.github.io’s past year of commit activity
    R 3 3 11 (1 issue needs help) 3 Updated Jan 31, 2025
  • simulist Public

    An R package for simulating line lists

    epiverse-trace/simulist’s past year of commit activity
    R 9 1 8 2 Updated Jan 31, 2025
  • tutorials-late Public
    epiverse-trace/tutorials-late’s past year of commit activity
    R 2 1 37 4 Updated Jan 30, 2025
  • ColOpenData Public

    ColOpenData is a package that acquires and wrangles Colombian socioeconomic, geospatial and climate data

    epiverse-trace/ColOpenData’s past year of commit activity
    R 11 1 5 2 Updated Jan 30, 2025
  • cleanepi Public

    R package to clean and standardize epidemiological data

    epiverse-trace/cleanepi’s past year of commit activity
    R 8 3 20 3 Updated Jan 30, 2025
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