From eda677d1d50e701f9aa120a857d5d490de110e40 Mon Sep 17 00:00:00 2001 From: "frank@tscc" Date: Wed, 20 Dec 2017 15:25:40 -0800 Subject: [PATCH] fix bug in ataqc --- ataqc/run_ataqc_single_lib.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ataqc/run_ataqc_single_lib.py b/ataqc/run_ataqc_single_lib.py index b8dfca8..f16b0c3 100755 --- a/ataqc/run_ataqc_single_lib.py +++ b/ataqc/run_ataqc_single_lib.py @@ -601,7 +601,7 @@ def get_samtools_flagstat(bam_file): return flagstat, mapped_reads -def get_fract_mapq(bam_file, paired_status, ,q=30): +def get_fract_mapq(bam_file, paired_status,q=30): ''' Runs samtools view to get the fraction of reads of a certain map quality ( primary and have mate)