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Jenkinsfile
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pipeline {
/*
* Defining where to run
*/
//// Any:
// agent any
//// By agent label:
// agent { label 'sandybridge' }
agent { label 'jenkinsfile' }
triggers {
pollSCM('H/15 * * * *')
}
environment {
XX="gcc"
}
options {
disableConcurrentBuilds()
buildDiscarder(logRotator(numToKeepStr: '50'))
timestamps()
}
stages {
stage ('build') {
steps {
withCredentials([string(credentialsId: '549fe118-9b01-49f6-9072-a813312a022b', variable: 'GITHUB_PAT')]) {
sh '''#!/bin/bash -le
module purge
module load ecrc-extras
module load mkl/2020.0.166
module load gcc/10.2.0
module load cmake/3.21.2
module load hwloc/2.4.0-gcc-10.2.0
module load openmpi/4.1.0-gcc-10.2.0
module load starpu/1.3.9-gcc-10.2.0-mkl-openmpi-4.1.0
module load gsl/2.6-gcc-10.2.0
module load nlopt/2.7.0-gcc-10.2.0
module load hdf5/1.12.0-gcc-10.2.0
module load netcdf/4.7.4-gcc-10.2.0
module load r-base/4.1.2-gcc-10.2.0
module list
set -x
#export the shared R libraries path
export R_LIBS=/opt/ecrc/r-base/4.1.2-gcc-10.2.0/ub18/libraries
export LD_PRELOAD=/opt/ecrc/mkl/2020.0.166/mkl/lib/intel64/libmkl_def.so:/opt/ecrc/mkl/2020.0.166/mkl/lib/intel64/libmkl_avx2.so:/opt/ecrc/mkl/2020.0.166/mkl/lib/intel64/libmkl_core.so:/opt/ecrc/mkl/2020.0.166/mkl/lib/intel64/libmkl_intel_lp64.so:/opt/ecrc/mkl/2020.0.166/mkl/lib/intel64/libmkl_intel_thread.so:/opt/ecrc/intelmpi/2020.0.166/lib/intel64/libiomp5.so
#Try to build in parallel
export MAKE='make -j 6 -l 8'
git submodule update --recursive --init
export EXAGEOSTATR=$PWD
##### BUILDING EXAGEOSTAT-R DEPENDENCIES #####
export EXAGEOSTATDEVDIR=$PWD/src
export HICMADIR=$EXAGEOSTATDEVDIR/hicma
export CHAMELEONDIR=$EXAGEOSTATDEVDIR/chameleon
export STARSHDIR=$HICMADIR/stars-h
export HCOREDIR=$HICMADIR/hcore
export HICMAINSTALLDIR=$HICMADIR/dependencies-prefix
cd $EXAGEOSTATDEVDIR
# Update submodules
git submodule update --init --recursive
ls
## CHAMELEON
cd $CHAMELEONDIR
git checkout release-1.1.0
#install Chameleon
rm -rf build
mkdir -p build/installdir
cd build
cmake .. -DCMAKE_INSTALL_PREFIX=$PWD/installdir -DCMAKE_C_FLAGS=-fPIC -DCHAMELEON_USE_MPI=OFF -DCMAKE_BUILD_TYPE="Release" \
-DCMAKE_C_FLAGS_RELEASE="-O3 -Ofast -w" -DCHAMELEON_USE_CUDA=OFF -DCHAMELEON_ENABLE_EXAMPLE=OFF \
-DCHAMELEON_ENABLE_TESTING=OFF -DCHAMELEON_ENABLE_TIMING=OFF -DBUILD_SHARED_LIBS=OFF
make clean
make -j # CHAMELEON parallel build seems to be fixed
make install
export PKG_CONFIG_PATH=$PWD/installdir/lib/pkgconfig:$PKG_CONFIG_PATH
## HICMA
cd $HICMADIR
git submodule update --init --recursive
mkdir -p $HICMAINSTALLDIR
rm -rf $HICMAINSTALLDIR/*
# STARS-H
cd $STARSHDIR
rm -rf build
mkdir -p build
cd build
cmake .. -DCMAKE_INSTALL_PREFIX=$HICMAINSTALLDIR -DMPI=OFF -DOPENMP=OFF -DSTARPU=OFF -DBUILD_SHARED_LIBS=ON -DCMAKE_C_FLAGS=-fPIC -DCMAKE_C_FLAGS_RELEASE="-O3 -Ofast -w"
make clean
make -j
make install
## HCORE
cd $HCOREDIR
rm -rf build
mkdir -p build
cd build
cmake .. -DCMAKE_INSTALL_PREFIX=$HICMAINSTALLDIR -DCMAKE_C_FLAGS=-fPIC -DBUILD_SHARED_LIBS=ON -DCMAKE_C_FLAGS_RELEASE="-O3 -Ofast -w"
make clean
make -j
make install
export PKG_CONFIG_PATH=$HICMAINSTALLDIR/lib/pkgconfig:$PKG_CONFIG_PATH
cd $HICMADIR
rm -rf build
mkdir -p build/installdir
cd build
cmake .. -DCMAKE_INSTALL_PREFIX=$PWD/installdir -DCMAKE_C_FLAGS=-fPIC -DHICMA_USE_MPI="$MPI_VALUE" -DCMAKE_BUILD_TYPE="Release" \
-DCMAKE_C_FLAGS_RELEASE="-O3 -Ofast -w" -DBUILD_SHARED_LIBS=ON -DCMAKE_C_FLAGS="-fcommon"
make clean
make -j
make install
export PKG_CONFIG_PATH=$PWD/installdir/lib/pkgconfig:$PKG_CONFIG_PATH
##### BUILDING EXAGEOSTAT-R ######
cd $EXAGEOSTATR
mkdir R_LIB
R CMD build .
package=$(ls -rt exa*z | tail -n 1)
R CMD INSTALL ./$package --library=$PWD/R_LIB/
R CMD check . --no-manual
'''
}
}
}
}
// Post build actions
post {
//always {
//}
//success {
//}
//unstable {
//}
//failure {
//}
unstable {
emailext body: "${env.JOB_NAME} - Please go to ${env.BUILD_URL}", subject: "Jenkins Pipeline build is UNSTABLE", recipientProviders: [[$class: 'CulpritsRecipientProvider'], [$class: 'RequesterRecipientProvider']]
}
failure {
emailext body: "${env.JOB_NAME} - Please go to ${env.BUILD_URL}", subject: "Jenkins Pipeline build FAILED", recipientProviders: [[$class: 'CulpritsRecipientProvider'], [$class: 'RequesterRecipientProvider']]
}
}
}