Merge pull request #20 from ecohealthalliance/dev

Dev

.git-crypt/.gitattributes

@@ -0,0 +1,4 @@
+# Do not edit this file.  To specify the files to encrypt, create your own
+# .gitattributes file in the directory where your files are.
+* !filter !diff
+*.gpg binary

.gitattributes

@@ -0,0 +1,2 @@
+.env filter=git-crypt diff=git-crypt
+auth/**/* filter=git-crypt diff=git-crypt

.github/workflows/publish.yml

@@ -0,0 +1,54 @@
+on:
+  workflow_dispatch:
+  push:
+    branches: main
+
+name: Quarto Publish
+
+jobs:
+  build-deploy:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    env:
+      GIT_CRYPT_KEY64: ${{ secrets.GIT_CRYPT_KEY64 }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Install system dependencies
+        run: |
+          apt-get update && apt-get install -y --no-install-recommends \
+          git-crypt
+          
+      - name: Trust git repo
+        run: |
+          git config --global --add safe.directory /__w/acdc-db-handbook/acdc-db-handbook
+          
+      - name: Decrypt repository using symmetric key
+        run: |
+          echo $GIT_CRYPT_KEY64 > git_crypt_key.key64 && base64 -di git_crypt_key.key64 > git_crypt_key.key && git-crypt unlock git_crypt_key.key
+          rm git_crypt_key.key git_crypt_key.key64
+
+      - name: Set up Quarto
+        uses: quarto-dev/quarto-actions/setup@v2
+
+      - name: Install tinytex
+        run: quarto install tinytex
+
+      - name: Install R
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: '4.4.1'
+
+      - name: Install R Dependencies
+        uses: r-lib/actions/setup-renv@v2
+        with:
+          cache-version: 1
+
+      - name: Render and Publish
+        uses: quarto-dev/quarto-actions/publish@v2
+        with:
+          target: gh-pages
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.gitignore

@@ -5,3 +5,4 @@
 
 /.quarto/
 
+/docs/