update info being printed when fetch step is running to make it clear that checksums are verified as well #5549
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions | |
name: EasyBuild framework unit tests | |
on: [push, pull_request] | |
permissions: | |
contents: read # to fetch code (actions/checkout) | |
concurrency: | |
group: ${{format('{0}:{1}:{2}', github.repository, github.ref, github.workflow)}} | |
cancel-in-progress: true | |
jobs: | |
setup: | |
runs-on: ubuntu-20.04 | |
outputs: | |
lmod8: Lmod-8.7.6 | |
modules4: modules-4.5.3 | |
modules5: modules-5.3.1 | |
steps: | |
- run: "true" | |
build: | |
needs: setup | |
runs-on: ubuntu-20.04 | |
strategy: | |
matrix: | |
python: [3.6] | |
modules_tool: | |
# use variables defined by 'setup' job above, see also | |
# https://docs.github.com/en/actions/reference/context-and-expression-syntax-for-github-actions#needs-context | |
- ${{needs.setup.outputs.lmod8}} | |
- ${{needs.setup.outputs.modules4}} | |
- ${{needs.setup.outputs.modules5}} | |
lc_all: [""] | |
include: | |
# Test different Python 3 versions with Lmod 8.x (with both Lua and Tcl module syntax) | |
- python: 3.7 | |
modules_tool: ${{needs.setup.outputs.lmod8}} | |
- python: 3.8 | |
modules_tool: ${{needs.setup.outputs.lmod8}} | |
- python: 3.9 | |
modules_tool: ${{needs.setup.outputs.lmod8}} | |
- python: '3.10' | |
modules_tool: ${{needs.setup.outputs.lmod8}} | |
- python: '3.11' | |
modules_tool: ${{needs.setup.outputs.lmod8}} | |
- python: '3.12' | |
modules_tool: ${{needs.setup.outputs.lmod8}} | |
- python: '3.13' | |
modules_tool: ${{needs.setup.outputs.lmod8}} | |
# There may be encoding errors in Python 3 which are hidden when an UTF-8 encoding is set | |
# Hence run the tests (again) with LC_ALL=C and Python 3.6 (or any < 3.7) | |
- python: 3.6 | |
modules_tool: ${{needs.setup.outputs.lmod8}} | |
lc_all: C | |
fail-fast: false | |
steps: | |
- uses: actions/checkout@v3 | |
- name: set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{matrix.python}} | |
architecture: x64 | |
- name: install OS & Python packages | |
run: | | |
# for modules tool | |
APT_PKGS="lua5.2 liblua5.2-dev lua-filesystem lua-posix tcl tcl-dev" | |
# for GitPython, python-hglib | |
APT_PKGS+=" git mercurial" | |
# dep for GC3Pie | |
APT_PKGS+=" time" | |
# Avoid apt-get update, as we don't really need it, | |
# and it does more harm than good (it's fairly expensive, and it results in flaky test runs) | |
if ! sudo apt-get install $APT_PKGS; then | |
# Try to update cache, then try again to resolve 404s of old packages | |
sudo apt-get update -yqq || true | |
sudo apt-get install $APT_PKGS | |
fi | |
# fix for lua-posix packaging issue, see https://bugs.launchpad.net/ubuntu/+source/lua-posix/+bug/1752082 | |
# needed for Ubuntu 18.04, but not for Ubuntu 20.04, so skipping symlinking if posix.so already exists | |
if [ ! -e /usr/lib/x86_64-linux-gnu/lua/5.2/posix.so ] ; then | |
sudo ln -s /usr/lib/x86_64-linux-gnu/lua/5.2/posix_c.so /usr/lib/x86_64-linux-gnu/lua/5.2/posix.so | |
fi | |
# Python packages | |
pip --version | |
pip install --upgrade pip | |
pip --version | |
pip install -r requirements.txt | |
if ! python -c "import distutils" 2> /dev/null; then | |
# we need setuptools for distutils in Python 3.12+, needed for python setup.py sdist | |
pip install --upgrade setuptools | |
fi | |
# git config is required to make actual git commits (cfr. tests for GitRepository) | |
git config --global user.name "Travis CI" | |
git config --global user.email "travis@travis-ci.org" | |
git config --get-regexp 'user.*' | |
- name: install GitHub token (if available) | |
env: | |
# token (owned by @boegelbot) with gist permissions (required for some of the tests for GitHub integration); | |
# this token is not available in pull requests, so tests that require it are skipped in PRs, | |
# and are only run after the PR gets merged | |
GITHUB_TOKEN: ${{secrets.CI_UNIT_TESTS_GITHUB_TOKEN}} | |
run: | | |
# only install GitHub token when testing with Lmod 8.x + Python 3.6 or 3.9, to avoid hitting GitHub rate limit | |
# tests that require a GitHub token are skipped automatically when no GitHub token is available | |
if [[ "${{matrix.modules_tool}}" =~ 'Lmod-8' ]] && [[ "${{matrix.python}}" =~ 3.[69] ]]; then | |
if [ ! -z $GITHUB_TOKEN ]; then | |
SET_KEYRING="import keyrings.alt.file; keyring.set_keyring(keyrings.alt.file.PlaintextKeyring())" | |
python -c "import keyring; $SET_KEYRING; keyring.set_password('github_token', 'easybuild_test', '$GITHUB_TOKEN')" | |
fi | |
echo "GitHub token installed!" | |
else | |
echo "Installation of GitHub token skipped!" | |
fi | |
- name: install modules tool | |
run: | | |
# avoid downloading modules tool sources into easybuild-framework dir | |
cd $HOME | |
export INSTALL_DEP=$GITHUB_WORKSPACE/easybuild/scripts/install_eb_dep.sh | |
# install Lmod | |
source $INSTALL_DEP ${{matrix.modules_tool}} $HOME | |
# changes in environment are not passed to other steps, so need to create files... | |
echo $MOD_INIT > mod_init | |
echo $PATH > path | |
if [ ! -z $MODULESHOME ]; then echo $MODULESHOME > moduleshome; fi | |
- name: check sources | |
run: | | |
# make sure there are no (top-level) "import setuptools" or "import pkg_resources" statements, | |
# since EasyBuild should not have a runtime requirement on setuptools | |
SETUPTOOLS_IMPORTS=$(egrep --exclude setup.py -RI '^(from|import)[ ]*pkg_resources|^(from|import)[ ]*setuptools' * || true) | |
test "x$SETUPTOOLS_IMPORTS" = "x" || (echo "Found setuptools and/or pkg_resources imports in easybuild/:\n${SETUPTOOLS_IMPORTS}" && exit 1) | |
- name: install sources | |
run: | | |
# install from source distribution tarball, to test release as published on PyPI | |
python setup.py sdist | |
ls dist | |
export PREFIX=/tmp/$USER/$GITHUB_SHA | |
pip install --prefix $PREFIX dist/easybuild[-_]framework*tar.gz | |
- name: run test suite | |
env: | |
EB_VERBOSE: 1 | |
LC_ALL: ${{matrix.lc_all}} | |
run: | | |
# run tests *outside* of checked out easybuild-framework directory, | |
# to ensure we're testing installed version (see previous step) | |
cd $HOME | |
# initialize environment for modules tool | |
if [ -f $HOME/moduleshome ]; then export MODULESHOME=$(cat $HOME/moduleshome); fi | |
source $(cat $HOME/mod_init) | |
type module | |
module --version | |
# make sure 'eb' is available via $PATH, and that $PYTHONPATH is set (some tests expect that); | |
# also pick up changes to $PATH set by sourcing $MOD_INIT | |
export PREFIX=/tmp/$USER/$GITHUB_SHA | |
export PATH=$PREFIX/bin:$(cat $HOME/path) | |
export PYTHONPATH=$PREFIX/lib/python${{matrix.python}}/site-packages:$PYTHONPATH | |
eb --version | |
# tell EasyBuild which modules tool is available | |
if [[ ${{matrix.modules_tool}} =~ ^modules- ]]; then | |
export EASYBUILD_MODULES_TOOL=EnvironmentModules | |
else | |
export EASYBUILD_MODULES_TOOL=Lmod | |
fi | |
export TEST_EASYBUILD_MODULES_TOOL=${EASYBUILD_MODULES_TOOL} | |
# Run tests with LUA and Tcl module syntax (where supported) | |
for module_syntax in Lua Tcl; do | |
# Only Lmod supports Lua | |
if [[ "${module_syntax}" == "Lua" ]] && [[ "${EASYBUILD_MODULES_TOOL}" != "Lmod" ]]; then | |
echo "Not testing with '${module_syntax}' as module syntax with '${EASYBUILD_MODULES_TOOL}' as modules tool" | |
continue | |
fi | |
printf "\n\n=====================> Using $module_syntax module syntax <=====================\n\n" | |
export EASYBUILD_MODULE_SYNTAX="${module_syntax}" | |
export TEST_EASYBUILD_MODULE_SYNTAX="${EASYBUILD_MODULE_SYNTAX}" | |
eb --show-config | |
# gather some useful info on test system | |
eb --show-system-info | |
# check GitHub configuration | |
eb --check-github --github-user=easybuild_test | |
# create file owned by root but writable by anyone (used by test_copy_file) | |
sudo touch /tmp/file_to_overwrite_for_easybuild_test_copy_file.txt | |
sudo chmod o+w /tmp/file_to_overwrite_for_easybuild_test_copy_file.txt | |
# run test suite | |
python -O -m test.framework.suite 2>&1 | tee test_framework_suite.log | |
# try and make sure output of running tests is clean (no printed messages/warnings) | |
IGNORE_PATTERNS="no GitHub token available" | |
IGNORE_PATTERNS+="|skipping SvnRepository test" | |
IGNORE_PATTERNS+="|requires Lmod as modules tool" | |
IGNORE_PATTERNS+="|stty: 'standard input': Inappropriate ioctl for device" | |
IGNORE_PATTERNS+="|CryptographyDeprecationWarning: Python 3.[567]" | |
IGNORE_PATTERNS+="|from cryptography.* import " | |
IGNORE_PATTERNS+="|CryptographyDeprecationWarning: Python 2" | |
IGNORE_PATTERNS+="|Blowfish" | |
IGNORE_PATTERNS+="|GC3Pie not available, skipping test" | |
IGNORE_PATTERNS+="|CryptographyDeprecationWarning: TripleDES has been moved" | |
IGNORE_PATTERNS+="|algorithms.TripleDES" | |
# '|| true' is needed to avoid that GitHub Actions stops the job on non-zero exit of grep (i.e. when there are no matches) | |
PRINTED_MSG=$(egrep -v "${IGNORE_PATTERNS}" test_framework_suite.log | grep '\.\n*[A-Za-z]' || true) | |
test "x$PRINTED_MSG" = "x" || (echo "ERROR: Found printed messages in output of test suite" && echo "${PRINTED_MSG}" && exit 1) | |
done |