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Bug in topaz/0.2.5.20231120-foss-2023a-CUDA-12.1.1 helical filament picking patch #22082

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cjroberts opened this issue Dec 20, 2024 · 0 comments
Open

Bug in topaz/0.2.5.20231120-foss-2023a-CUDA-12.1.1 helical filament picking patch #22082

cjroberts opened this issue Dec 20, 2024 · 0 comments

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@cjroberts
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If filament picking is not selected topaz fails due to an extra argument in line 232 of the helical filament picking patch length=self.filaments_length, which is not in the definition of non_maximum_suppression.

easybuild-easyconfigs/easybuild/easyconfigs/t/topaz/topaz-0.2.5.20231120_helical-filament-picking.patch

Line 232 in ef644ae

+ score,coords = non_maximum_suppression(score, self.radius, threshold=self.threshold, length=self.filaments_length)

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@cjroberts