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easybuild/easyconfigs/a/ABRicate/ABRicate-1.0.0-gompi-2023a.eb
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| Original file line number | Diff line number | Diff line change |
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| # Author: Pavel Grochal (INUITS) | ||
| # License: GPLv2 | ||
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| easyblock = 'Tarball' | ||
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| name = 'ABRicate' | ||
| version = '1.0.0' | ||
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| homepage = 'https://github.com/tseemann/abricate' | ||
| description = "Mass screening of contigs for antimicrobial and virulence genes" | ||
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| toolchain = {'name': 'gompi', 'version': '2023a'} | ||
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| # https://github.com/tseemann/abricate | ||
| github_account = 'tseemann' | ||
| source_urls = [GITHUB_LOWER_SOURCE] | ||
| sources = ['v%(version)s.zip'] | ||
| checksums = ['e7e2af45e47b887c4dba754af87a24014dcb5552eb3fe2a3fd66bb5359a0daf9'] | ||
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| dependencies = [ | ||
| ('Perl', '5.36.1'), | ||
| ('any2fasta', '0.4.2'), | ||
| ('BioPerl', '1.7.8'), | ||
| ('BLAST+', '2.14.1'), | ||
| ] | ||
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| postinstallcmds = ['%(installdir)s/bin/abricate --setupdb'] | ||
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| sanity_check_paths = { | ||
| 'files': ['bin/abricate', 'bin/abricate-get_db'], | ||
| 'dirs': ['db'], | ||
| } | ||
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| sanity_check_commands = [ | ||
| "abricate --help", | ||
| "abricate --list", | ||
| ] | ||
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| modloadmsg = "abricate databases are located in $EBROOTABRICATE/db\n" | ||
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| moduleclass = 'bio' |
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| # easybuild easyconfig | ||
| # | ||
| # John Dey <jfdey@fredhutch.org> Fred Hutchinson Cancer Center | ||
| # Thomas Eylenbosch - Gluo NV | ||
| # Update: Petr Král (INUITS) | ||
| # | ||
| easyblock = 'Bundle' | ||
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| name = 'AGAT' | ||
| version = '1.4.0' | ||
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| homepage = 'https://agat.readthedocs.io/en/latest/' | ||
| description = """AGAT: Another GTF/GFF Analysis Toolkit. Suite of tools to handle gene annotations | ||
| in any GTF/GFF format.""" | ||
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| toolchain = {'name': 'GCC', 'version': '12.3.0'} | ||
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| builddependencies = [('binutils', '2.40')] | ||
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| dependencies = [ | ||
| ('Perl', '5.36.1'), | ||
| ('BioPerl', '1.7.8'), | ||
| ] | ||
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| exts_defaultclass = 'PerlModule' | ||
| exts_filter = ("perl -e 'require %(ext_name)s'", '') | ||
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| exts_list = [ | ||
| ('Set::Object', '1.42', { | ||
| 'source_tmpl': 'Set-Object-%(version)s.tar.gz', | ||
| 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RU/RURBAN'], | ||
| 'checksums': ['d18c5a8a233eabbd0206cf3da5b00fcdd7b37febf12a93dcc3d1c026e6fdec45'], | ||
| }), | ||
| ('File::Share', '0.27', { | ||
| 'source_tmpl': 'File-Share-%(version)s.tar.gz', | ||
| 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], | ||
| 'checksums': ['d6e8f4b55ebd38e0bb45e44392e3fa27dc1fde16abc5d1ff53e157e19a5755be'], | ||
| }), | ||
| ('Sort::Naturally', '1.03', { | ||
| 'source_tmpl': 'Sort-Naturally-%(version)s.tar.gz', | ||
| 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], | ||
| 'checksums': ['eaab1c5c87575a7826089304ab1f8ffa7f18e6cd8b3937623e998e865ec1e746'], | ||
| }), | ||
| ('Class::MethodMaker', '2.24', { | ||
| 'source_tmpl': 'Class-MethodMaker-%(version)s.tar.gz', | ||
| 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SC/SCHWIGON/class-methodmaker'], | ||
| 'checksums': ['5eef58ccb27ebd01bcde5b14bcc553b5347a0699e5c3e921c7780c3526890328'], | ||
| }), | ||
| ('Term::ProgressBar', '2.23', { | ||
| 'source_tmpl': 'Term-ProgressBar-%(version)s.tar.gz', | ||
| 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MANWAR'], | ||
| 'checksums': ['defc03fb9f4ac1c9df1359d312bff3c0865ddefbf3aba64cd42a69a86215d49d'], | ||
| }), | ||
| (name, version, { | ||
| 'modulename': 'AGAT::Utilities', | ||
| 'source_urls': ['https://github.com/NBISweden/AGAT/archive/refs/tags'], | ||
| 'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], | ||
| 'checksums': ['d5e30db44b5d05ed51c606a823894c01c85c1ed85580148ad5473cb2f2b2ac77'], | ||
| }), | ||
| ] | ||
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| modextrapaths = {'PERL5LIB': 'lib/perl5/site_perl/%(perlver)s/'} | ||
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| sanity_check_paths = { | ||
| 'files': [], | ||
| 'dirs': ['bin', 'lib/perl5/site_perl/%(perlver)s/%(name)s'], | ||
| } | ||
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| sanity_check_commands = ['agat_convert_bed2gff.pl --help'] | ||
| moduleclass = 'bio' |
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