main.tex

\documentclass{report}
\usepackage{format-stanford}
\usepackage{breakcites}
\usepackage{microtype}
\usepackage{graphicx}
\usepackage{csvsimple}
\usepackage{gensymb}
\usepackage{hyperref}
\usepackage{siunitx}
\usepackage{epigraph}
\graphicspath{{./figures/}}
\onlinetrue
\setstretch{1.6}

\begin{document}
\title{Biodiversity Monitoring, Earth Observations and the Ecology of Scale}
\author{Christopher Benjamin Anderson}
\principaladviser{Gretchen C. Daily}
\firstreader{Erin A. Mordecai}
\secondreader{Christopher B. Field}
\submitdate{December 2020}
\dept{Biology}

% preface
\beforepreface
\input{abstract.tex}
\input{acknowledgements.tex}
\input{epigraph.tex}
\afterpreface

% main text
\input{manuscript-introduction.tex}
\input{manuscript-ch1.tex}
\input{manuscript-ch2.tex}
\input{manuscript-ch3.tex}
\input{manuscript-conclusions.tex}

% appendix
\appendix
\input{glossary.tex}
\input{appendix-supplement.tex}
\input{appendix-other-work.tex}
\input{appendix-ele.tex}

% bibliography
\bibliographystyle{apalike}
\bibliography{bibliography}
\end{document}