From d8ace1cb780c2697a788c2404cd417b0af532ed1 Mon Sep 17 00:00:00 2001 From: Erick Armingol Date: Wed, 29 Nov 2023 23:08:24 +0000 Subject: [PATCH] Deployed c904946 with MkDocs version: 1.3.0 --- 404.html | 9 + documentation/documentation.md | 72 +- documentation/index.html | 26928 +++++++--------- index.html | 142 +- index.md | 112 +- objects.inv | Bin 2702 -> 2624 bytes requirements.in | 4 +- requirements.txt | 22 +- search.html | 9 + search/search_index.json | 2 +- sitemap.xml | 27 +- sitemap.xml.gz | Bin 202 -> 202 bytes .../01-Tensor-Factorization-ASD/index.html | 13 +- .../ASD/02-Factor-Specific-ASD/index.html | 9 + tutorials/ASD/03-GSEA-ASD/index.html | 13 +- tutorials/GPU-Example/GPU-Example.ipynb | 317 +- tutorials/GPU-Example/index.html | 159 +- .../Tensor-cell2cell-Spatial.ipynb | 1515 + tutorials/Tensor-cell2cell-Spatial/index.html | 3937 +++ .../Toy-Example-BulkPipeline.ipynb | 904 + tutorials/Toy-Example-BulkPipeline/index.html | 2783 ++ .../Toy-Example-SingleCellPipeline.ipynb | 2124 ++ .../Toy-Example-SingleCellPipeline/index.html | 4340 +++ 23 files changed, 27825 insertions(+), 15616 deletions(-) create mode 100644 tutorials/Tensor-cell2cell-Spatial/Tensor-cell2cell-Spatial.ipynb create mode 100644 tutorials/Tensor-cell2cell-Spatial/index.html create mode 100644 tutorials/Toy-Example-BulkPipeline/Toy-Example-BulkPipeline.ipynb create mode 100644 tutorials/Toy-Example-BulkPipeline/index.html create mode 100644 tutorials/Toy-Example-SingleCellPipeline/Toy-Example-SingleCellPipeline.ipynb create mode 100644 tutorials/Toy-Example-SingleCellPipeline/index.html diff --git a/404.html b/404.html index 2587775..41b3b28 100644 --- a/404.html +++ b/404.html @@ -42,6 +42,13 @@
  • API Documentation
    • +

    cell2cell Tutorials

    +

    Tensor-cell2cell Tutorials

    diff --git a/documentation/documentation.md b/documentation/documentation.md index a147b0c..0509571 100644 --- a/documentation/documentation.md +++ b/documentation/documentation.md @@ -26,74 +26,4 @@ visualizations to simplify the interpretation of results: Below, all the inputs, parameters (including their different options), and outputs are detailed. Source code of the functions is also included. -::: cell2cell.analysis - handler: python - rendering: - show_root_heading: true - show_source: true - -::: cell2cell.clustering - handler: python - rendering: - show_root_heading: true - show_source: true - -::: cell2cell.core - handler: python - rendering: - show_root_heading: true - show_source: true - -::: cell2cell.datasets - handler: python - rendering: - show_root_heading: true - show_source: true - -::: cell2cell.external - handler: python - rendering: - show_root_heading: true - show_source: true - -::: cell2cell.io - handler: python - rendering: - show_root_heading: true - show_source: true - -::: cell2cell.plotting - handler: python - rendering: - show_root_heading: true - show_source: true - -::: cell2cell.preprocessing - handler: python - rendering: - show_root_heading: true - show_source: true - -::: cell2cell.spatial - handler: python - rendering: - show_root_heading: true - show_source: true - -::: cell2cell.stats - handler: python - rendering: - show_root_heading: true - show_source: true - -::: cell2cell.tensor - handler: python - rendering: - show_root_heading: true - show_source: true - -::: cell2cell.utils - handler: python - rendering: - show_root_heading: true - show_source: true +::: cell2cell diff --git a/documentation/index.html b/documentation/index.html index d374a9a..ac17e9d 100644 --- a/documentation/index.html +++ b/documentation/index.html @@ -48,15 +48,37 @@