CTxAI - Eligibility Criteria

This is the repository for the manuscript "Analysis of Eligibility Criterion Clusters Based on Large Language Models for Clinical Trial Design".

Install Dependencies

You can install the dependencies using Conda (but feel free to use your own ways):

1. Install Miniconda or Anaconda on your system if you haven't already.

2. Create a new Conda environment using the environment/setup_env.sh script:

   ./environment/setup_env.sh
   

3. Activate the new environment:

   conda activate ctxai
   

Running the experiments

Start by downloading the raw dataset by executing:

./download_raw_data.sh

Then, build the eligibility criterion dataset by executing:

python src/parse_data.py

Then, run all experiments:

python experiments/experiment_1.py
python experiments/experiment_2.py
./experiments/experiment_3.sh

Finally, plot the results:

python experiments/plot_experiment_1.py
python experiments/plot_experiment_2.py
python experiments/plot_experiment_3.py