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nicopresto edited this page Jun 7, 2012 · 8 revisions

Releases

  • DetA - Entrez Script
  • DetB - Cassandra version
  • DetG - Mongo mapreduce
  • DetD -Mongo pythonic

History

v0.1 entrez script (nico)

  • ran on http entrez
  • return xml
  • plot words with nltk

v0.2 cassandra (richard)

  • cassandra was not used
  • v2 of entrez script run multiple runs

v0.3 cassandra (zack)

  • cassandra + java + hadoop
  • ran/built with difficulty
  • generated the original rankings for malaria

v0.4 mongo mapreduce (zack)

  • recycle this code for network model
  • mongo + python + javascript
  • generated rankings for ebola

v0.5 mongo pythonic (zack)

  • generated ebola ranks
  • reads from mongo abstracts and puts in database of counts
  • when used prints the results