setup.py

import os
from setuptools import setup, find_packages

try:
    readme = open(os.path.join(os.path.dirname(__file__), 'README.md'), 'r').read()
except:
    readme = ''

version = '0.0.1'

#install_requires = [
#    'numpy', 'scipy', 'torch', 'tqdm', 'scikit-learn', 'matplotlib',
#    'pandas', 'hdf5plugin', 'scanpy', 'requests', # for scrock.datasets
#]

with open(os.path.join(os.path.dirname(__file__), 'requirements.in'), 'r') as fp:
    install_requires = [
        line
        for line in fp.read().splitlines()
        if line and not line.startswith('#')
    ]

setup(
    name='scrock',
    version=version,
    description="scROCK (single-cell Refinement Of Cluster Knitting) is an algorithm for correcting cluster labels for scRNA-seq data",
    long_description=readme,
    classifiers=[
        "Programming Language :: Python",
        "Programming Language :: Python :: 3.8",
        "Intended Audience :: Science/Research",
        "Operating System :: OS Independent",
        "Development Status :: 4 - Beta",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
    ],
    keywords='scRNA-seq, ADE, scROCK',
    author='dos257',
    author_email='149811921+dos257@users.noreply.github.com',
    url='https://github.com/dos257/scROCK',
    packages=find_packages(),
    license='MIT',
    install_requires=install_requires,
)