djcotter / bioinformatics-utils Public

utility scripts for bioinformatics projects

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Name		Name	Last commit message	Last commit date
Latest commit History 102 Commits
anchor_clustering_algorithms		anchor_clustering_algorithms
embedding_workflow_scripts		embedding_workflow_scripts
README.md		README.md
anchors_from_fasta.py		anchors_from_fasta.py
convert_satc_format.py		convert_satc_format.py
create_protein_motifs_from_fasta.py		create_protein_motifs_from_fasta.py
deduplicate_anchors.py		deduplicate_anchors.py
embeddings_glmnet.R		embeddings_glmnet.R
extract_embeddings_from_torch_objects.py		extract_embeddings_from_torch_objects.py
fasta_to_tsv.py		fasta_to_tsv.py
featurize_satc.py		featurize_satc.py
glmnet_on_embeddings_PCs.R		glmnet_on_embeddings_PCs.R
glmnet_on_raw_embeddings.R		glmnet_on_raw_embeddings.R
grab_ena_urls.sh		grab_ena_urls.sh
jumble_sequences.py		jumble_sequences.py
kmer_decomposition.py		kmer_decomposition.py
make_fasta.py		make_fasta.py
parse_anchor_target_counts.py		parse_anchor_target_counts.py
process_splash_data_for_embedding.R		process_splash_data_for_embedding.R
revcomp_fasta.py		revcomp_fasta.py
run_lookup.py		run_lookup.py
satc_to_fasta_with_anchor_clustering.py		satc_to_fasta_with_anchor_clustering.py
select_important_anchors.R		select_important_anchors.R
test_lev_cluster.py		test_lev_cluster.py
translate_fasta.py		translate_fasta.py
translate_satc.py		translate_satc.py