From 509171fd27c9ea7cddd7657779a1ab0a97cc6b5e Mon Sep 17 00:00:00 2001
From: Stuart Swerdloff <sjswerdloff@gmail.com>
Date: Mon, 10 Feb 2025 16:43:46 +1300
Subject: [PATCH] update to python 3.11 (will need to tweak pyproject.toml to
 allow > 3.9.13 < 3.12, but useful for forcing for testing) update to pandas
 2.x and address change in API (append -> concat) incorporate
 app.processEvents() in conftest.py to avoid a signal handling error

---
 poetry.lock                   | 1240 +++++++++++++++------------------
 pyproject.toml                |   12 +-
 src/Model/Anon.py             |    8 +-
 test/conftest.py              |    1 +
 test/test_view_iso2roi_gui.py |   12 +
 5 files changed, 598 insertions(+), 675 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 366fc1e7..243b936f 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -20,13 +20,13 @@ tests = ["hypothesis", "pytest"]
 
 [[package]]
 name = "alabaster"
-version = "0.7.16"
+version = "1.0.0"
 description = "A light, configurable Sphinx theme"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 files = [
-    {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"},
-    {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"},
+    {file = "alabaster-1.0.0-py3-none-any.whl", hash = "sha256:fc6786402dc3fcb2de3cabd5fe455a2db534b371124f1f21de8731783dec828b"},
+    {file = "alabaster-1.0.0.tar.gz", hash = "sha256:c00dca57bca26fa62a6d7d0a9fcce65f3e026e9bfe33e9c538fd3fbb2144fd9e"},
 ]
 
 [[package]]
@@ -97,7 +97,6 @@ files = [
 ]
 
 [package.dependencies]
-exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""}
 idna = ">=2.8"
 sniffio = ">=1.1"
 typing_extensions = {version = ">=4.5", markers = "python_version < \"3.13\""}
@@ -205,9 +204,6 @@ files = [
     {file = "astroid-3.3.8.tar.gz", hash = "sha256:a88c7994f914a4ea8572fac479459f4955eeccc877be3f2d959a33273b0cf40b"},
 ]
 
-[package.dependencies]
-typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""}
-
 [[package]]
 name = "asttokens"
 version = "3.0.0"
@@ -361,8 +357,6 @@ mypy-extensions = ">=0.4.3"
 packaging = ">=22.0"
 pathspec = ">=0.9.0"
 platformdirs = ">=2"
-tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
-typing-extensions = {version = ">=4.0.1", markers = "python_version < \"3.11\""}
 
 [package.extras]
 colorama = ["colorama (>=0.4.3)"]
@@ -670,76 +664,65 @@ test = ["pytest"]
 
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 name = "contourpy"
-version = "1.3.0"
+version = "1.3.1"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 optional = false
-python-versions = ">=3.9"
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-tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""}
-
 [package.extras]
 toml = ["tomli"]
 
@@ -1134,7 +1109,6 @@ docutils = ">=0.19,<=0.21.2"
 Pygments = "*"
 restructuredtext-lint = ">=0.7"
 stevedore = "*"
-tomli = {version = "*", markers = "python_version < \"3.11\""}
 
 [[package]]
 name = "docutils"
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-
 [[package]]
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 [package.extras]
@@ -1462,13 +1422,13 @@ test = ["objgraph", "psutil"]
 
 [[package]]
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-version = "2.6.6"
+version = "2.6.7"
 description = "File identification library for Python"
 optional = false
 python-versions = ">=3.9"
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@@ -1534,27 +1494,31 @@ files = [
 
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-description = "Toolbox for imbalanced dataset in machine learning."
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+description = "Toolbox for imbalanced dataset in machine learning"
 optional = false
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-scipy = ">=1.5.0"
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+numpy = ">=1.24.3,<3"
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+scipy = ">=1.10.1,<2"
+sklearn-compat = ">=0.1,<1"
+threadpoolctl = ">=2.0.0,<4"
 
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+dev = ["ipykernel", "ipython", "jupyterlab"]
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+linters = ["black (==23.3.0)", "pre-commit", "ruff (==0.4.8)"]
+optional = ["pandas (>=1.5.3,<3)"]
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 [[package]]
 name = "imblearn"
@@ -1589,28 +1553,6 @@ docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.link
 perf = ["ipython"]
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-description = "Read resources from Python packages"
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 [[package]]
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@@ -1668,40 +1610,40 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio
 
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+stack_data = "*"
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 [package.extras]
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 nbconvert = ["nbconvert"]
 nbformat = ["nbformat"]
 notebook = ["ipywidgets", "notebook"]
 parallel = ["ipyparallel"]
 qtconsole = ["qtconsole"]
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+test = ["packaging", "pickleshare", "pytest", "pytest-asyncio (<0.22)", "testpath"]
+test-extra = ["curio", "ipython[test]", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.23)", "pandas", "trio"]
 
 [[package]]
 name = "isoduration"
@@ -1936,7 +1878,6 @@ files = [
 ]
 
 [package.dependencies]
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@@ -2108,125 +2049,91 @@ type = ["pygobject-stubs", "pytest-mypy", "shtab", "types-pywin32"]
 
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 [[package]]
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 [[package]]
 name = "lifelines"
-version = "0.28.0"
+version = "0.29.0"
 description = "Survival analysis in Python, including Kaplan Meier, Nelson Aalen and regression"
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 [package.dependencies]
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 formulaic = ">=0.2.2"
 matplotlib = ">=3.0"
 numpy = ">=1.14.0,<2.0"
-pandas = ">=1.2.0"
-scipy = ">=1.2.0"
+pandas = ">=2.1"
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 [[package]]
 name = "macholib"
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 python-dateutil = ">=2.7"
 
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+pyinstaller-hooks-contrib = ">=2025.1"
 pywin32-ctypes = {version = ">=0.2.1", markers = "sys_platform == \"win32\""}
 setuptools = ">=42.0.0"
 
@@ -3556,7 +3482,6 @@ files = [
 ]
 
 [package.dependencies]
-importlib_metadata = {version = ">=4.6", markers = "python_version < \"3.10\""}
 packaging = ">=22.0"
 setuptools = ">=42.0.0"
 
@@ -3617,13 +3542,11 @@ files = [
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 colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""}
-dill = {version = ">=0.2", markers = "python_version < \"3.11\""}
+dill = {version = ">=0.3.6", markers = "python_version >= \"3.11\""}
 isort = ">=4.2.5,<5.13.0 || >5.13.0,<7"
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 tomlkit = ">=0.10.1"
-typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
 spelling = ["pyenchant (>=3.2,<4.0)"]
@@ -3777,22 +3700,23 @@ files = [
 
 [[package]]
 name = "pynetdicom"
-version = "2.0.2"
+version = "2.1.1"
 description = "A Python implementation of the DICOM networking protocol"
 optional = false
-python-versions = ">=3.7"
+python-versions = "<4.0,>=3.10"
 files = [
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-pydicom = ">=2.2.0"
+pydicom = ">=2.4,<2.5"
 
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-apps = ["sqlalchemy"]
-docs = ["numpydoc", "sphinx", "sphinx-copybutton", "sphinx-issues", "sphinx-rtd-theme", "sphinxcontrib-napoleon"]
-tests = ["pyfakefs", "pytest", "sqlalchemy"]
+apps = ["sqlalchemy (>=2.0,<3.0)"]
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 [[package]]
 name = "pyparsing"
@@ -3878,11 +3802,9 @@ files = [
 
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 iniconfig = "*"
 packaging = "*"
 pluggy = ">=1.5,<2"
-tomli = {version = ">=1", markers = "python_version < \"3.11\""}
 
 [package.extras]
 dev = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
@@ -3950,11 +3872,8 @@ files = [
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 filelock = ">=3.0"
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-    {version = ">=4.6", markers = "python_version >= \"3.6\" and python_version < \"3.10\""},
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+mypy = {version = ">=0.900", markers = "python_version >= \"3.11\""}
+pytest = {version = ">=6.2", markers = "python_version >= \"3.10\""}
 
 [[package]]
 name = "pytest-pylint"
@@ -3970,7 +3889,6 @@ files = [
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 pylint = ">=2.15.0"
 pytest = ">=7.0"
-tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
 
 [[package]]
 name = "pytest-qt"
@@ -4064,9 +3982,6 @@ files = [
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-[package.dependencies]
-typing_extensions = {version = "*", markers = "python_version < \"3.10\""}
-
 [package.extras]
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@@ -4098,7 +4013,6 @@ files = [
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 platformdirs = {version = ">=3.11.0", optional = true, markers = "extra == \"global\""}
-tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""}
 
 [package.extras]
 doc = ["sphinx (>=7.1.2)", "tabulate (>=0.9.0)"]
@@ -4604,7 +4518,6 @@ files = [
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 markdown-it-py = ">=2.2.0"
 pygments = ">=2.13.0,<3.0.0"
-typing-extensions = {version = ">=4.0.0,<5.0", markers = "python_version < \"3.11\""}
 
 [package.extras]
 jupyter = ["ipywidgets (>=7.5.1,<9)"]
@@ -4791,7 +4704,6 @@ files = [
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 packaging = "*"
 setuptools = ">=42.0.0"
-tomli = {version = "*", markers = "python_version < \"3.11\""}
 wheel = ">=0.32.0"
 
 [package.extras]
@@ -4802,50 +4714,50 @@ test = ["build (>=0.7)", "cython (>=0.25.1)", "importlib-metadata", "pip", "pyte
 
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 [package.dependencies]
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 lazy-loader = ">=0.4"
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 packaging = ">=21"
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-scipy = ">=1.9"
+pillow = ">=10.1"
+scipy = ">=1.11.2"
 tifffile = ">=2022.8.12"
 
 [package.extras]
-build = ["Cython (>=3.0.4)", "build", "meson-python (>=0.15)", "ninja", "numpy (>=2.0.0rc1)", "packaging (>=21)", "pythran", "setuptools (>=67)", "spin (==0.8)", "wheel"]
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 [[package]]
@@ -4904,45 +4816,60 @@ tests = ["black (>=24.3.0)", "matplotlib (>=3.3.4)", "mypy (>=1.9)", "numpydoc (
 
 [[package]]
 name = "scipy"
-version = "1.13.1"
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 description = "Fundamental algorithms for scientific computing in Python"
 optional = false
-python-versions = ">=3.9"
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 ]
 
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+optional = false
+python-versions = ">=3.8"
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+[package.dependencies]
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+
+[package.extras]
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+docs = ["mkdocs", "mkdocs-material"]
+lint = ["pre-commit"]
+tests = ["pandas", "pytest", "pytest-cov", "pytest-xdist", "pytz"]
+
 [[package]]
 name = "smmap"
 version = "5.0.2"
@@ -5173,56 +5120,58 @@ files = [
 
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 [package.extras]
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 [[package]]
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+sphinx = ">=5.1.0"
 
 [package.extras]
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+lint = ["lxml-stubs (>=0.4)", "mypy (>=1.10)", "ruff (>=0.5)", "types-docutils (>=0.21)"]
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+test = ["coverage (>=6.5)", "lxml (>=4.9)", "pytest (>=8.0)", "setuptools (>=70.0)", "typing_extensions (>=4.9)"]
 
 [[package]]
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 name = "tifffile"
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+version = "2025.1.10"
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 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 files = [
-    {file = "tifffile-2024.8.30-py3-none-any.whl", hash = "sha256:8bc59a8f02a2665cd50a910ec64961c5373bee0b8850ec89d3b7b485bf7be7ad"},
-    {file = "tifffile-2024.8.30.tar.gz", hash = "sha256:2c9508fe768962e30f87def61819183fb07692c258cb175b3c114828368485a4"},
+    {file = "tifffile-2025.1.10-py3-none-any.whl", hash = "sha256:ed24cf4c99fb13b4f5fb29f8a0d5605e60558c950bccbdca2a6470732a27cfb3"},
+    {file = "tifffile-2025.1.10.tar.gz", hash = "sha256:baaf0a3b87bf7ec375fa1537503353f70497eabe1bdde590f2e41cc0346e612f"},
 ]
 
 [package.dependencies]
 numpy = "*"
 
 [package.extras]
-all = ["defusedxml", "fsspec", "imagecodecs (>=2023.8.12)", "lxml", "matplotlib", "zarr"]
-codecs = ["imagecodecs (>=2023.8.12)"]
+all = ["defusedxml", "fsspec", "imagecodecs (>=2024.12.30)", "lxml", "matplotlib", "zarr (<3)"]
+codecs = ["imagecodecs (>=2024.12.30)"]
 plot = ["matplotlib"]
-test = ["cmapfile", "czifile", "dask", "defusedxml", "fsspec", "imagecodecs", "lfdfiles", "lxml", "ndtiff", "oiffile", "psdtags", "pytest", "roifile", "xarray", "zarr"]
+test = ["cmapfile", "czifile", "dask", "defusedxml", "fsspec", "imagecodecs", "lfdfiles", "lxml", "ndtiff", "oiffile", "psdtags", "pytest", "roifile", "xarray", "zarr (<3)"]
 xml = ["defusedxml", "lxml"]
-zarr = ["fsspec", "zarr"]
+zarr = ["fsspec", "zarr (<3)"]
 
 [[package]]
 name = "timeago"
@@ -5655,47 +5604,6 @@ files = [
     {file = "toml-0.10.2.tar.gz", hash = "sha256:b3bda1d108d5dd99f4a20d24d9c348e91c4db7ab1b749200bded2f839ccbe68f"},
 ]
 
-[[package]]
-name = "tomli"
-version = "2.2.1"
-description = "A lil' TOML parser"
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "tomli-2.2.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:678e4fa69e4575eb77d103de3df8a895e1591b48e740211bd1067378c69e8249"},
-    {file = "tomli-2.2.1-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:023aa114dd824ade0100497eb2318602af309e5a55595f76b626d6d9f3b7b0a6"},
-    {file = "tomli-2.2.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:ece47d672db52ac607a3d9599a9d48dcb2f2f735c6c2d1f34130085bb12b112a"},
-    {file = "tomli-2.2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6972ca9c9cc9f0acaa56a8ca1ff51e7af152a9f87fb64623e31d5c83700080ee"},
-    {file = "tomli-2.2.1-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:c954d2250168d28797dd4e3ac5cf812a406cd5a92674ee4c8f123c889786aa8e"},
-    {file = "tomli-2.2.1-cp311-cp311-musllinux_1_2_aarch64.whl", hash = "sha256:8dd28b3e155b80f4d54beb40a441d366adcfe740969820caf156c019fb5c7ec4"},
-    {file = "tomli-2.2.1-cp311-cp311-musllinux_1_2_i686.whl", hash = "sha256:e59e304978767a54663af13c07b3d1af22ddee3bb2fb0618ca1593e4f593a106"},
-    {file = "tomli-2.2.1-cp311-cp311-musllinux_1_2_x86_64.whl", hash = "sha256:33580bccab0338d00994d7f16f4c4ec25b776af3ffaac1ed74e0b3fc95e885a8"},
-    {file = "tomli-2.2.1-cp311-cp311-win32.whl", hash = "sha256:465af0e0875402f1d226519c9904f37254b3045fc5084697cefb9bdde1ff99ff"},
-    {file = "tomli-2.2.1-cp311-cp311-win_amd64.whl", hash = "sha256:2d0f2fdd22b02c6d81637a3c95f8cd77f995846af7414c5c4b8d0545afa1bc4b"},
-    {file = "tomli-2.2.1-cp312-cp312-macosx_10_13_x86_64.whl", hash = "sha256:4a8f6e44de52d5e6c657c9fe83b562f5f4256d8ebbfe4ff922c495620a7f6cea"},
-    {file = "tomli-2.2.1-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:8d57ca8095a641b8237d5b079147646153d22552f1c637fd3ba7f4b0b29167a8"},
-    {file = "tomli-2.2.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4e340144ad7ae1533cb897d406382b4b6fede8890a03738ff1683af800d54192"},
-    {file = "tomli-2.2.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:db2b95f9de79181805df90bedc5a5ab4c165e6ec3fe99f970d0e302f384ad222"},
-    {file = "tomli-2.2.1-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:40741994320b232529c802f8bc86da4e1aa9f413db394617b9a256ae0f9a7f77"},
-    {file = "tomli-2.2.1-cp312-cp312-musllinux_1_2_aarch64.whl", hash = "sha256:400e720fe168c0f8521520190686ef8ef033fb19fc493da09779e592861b78c6"},
-    {file = "tomli-2.2.1-cp312-cp312-musllinux_1_2_i686.whl", hash = "sha256:02abe224de6ae62c19f090f68da4e27b10af2b93213d36cf44e6e1c5abd19fdd"},
-    {file = "tomli-2.2.1-cp312-cp312-musllinux_1_2_x86_64.whl", hash = "sha256:b82ebccc8c8a36f2094e969560a1b836758481f3dc360ce9a3277c65f374285e"},
-    {file = "tomli-2.2.1-cp312-cp312-win32.whl", hash = "sha256:889f80ef92701b9dbb224e49ec87c645ce5df3fa2cc548664eb8a25e03127a98"},
-    {file = "tomli-2.2.1-cp312-cp312-win_amd64.whl", hash = "sha256:7fc04e92e1d624a4a63c76474610238576942d6b8950a2d7f908a340494e67e4"},
-    {file = "tomli-2.2.1-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:f4039b9cbc3048b2416cc57ab3bda989a6fcf9b36cf8937f01a6e731b64f80d7"},
-    {file = "tomli-2.2.1-cp313-cp313-macosx_11_0_arm64.whl", hash = "sha256:286f0ca2ffeeb5b9bd4fcc8d6c330534323ec51b2f52da063b11c502da16f30c"},
-    {file = "tomli-2.2.1-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a92ef1a44547e894e2a17d24e7557a5e85a9e1d0048b0b5e7541f76c5032cb13"},
-    {file = "tomli-2.2.1-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:9316dc65bed1684c9a98ee68759ceaed29d229e985297003e494aa825ebb0281"},
-    {file = "tomli-2.2.1-cp313-cp313-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:e85e99945e688e32d5a35c1ff38ed0b3f41f43fad8df0bdf79f72b2ba7bc5272"},
-    {file = "tomli-2.2.1-cp313-cp313-musllinux_1_2_aarch64.whl", hash = "sha256:ac065718db92ca818f8d6141b5f66369833d4a80a9d74435a268c52bdfa73140"},
-    {file = "tomli-2.2.1-cp313-cp313-musllinux_1_2_i686.whl", hash = "sha256:d920f33822747519673ee656a4b6ac33e382eca9d331c87770faa3eef562aeb2"},
-    {file = "tomli-2.2.1-cp313-cp313-musllinux_1_2_x86_64.whl", hash = "sha256:a198f10c4d1b1375d7687bc25294306e551bf1abfa4eace6650070a5c1ae2744"},
-    {file = "tomli-2.2.1-cp313-cp313-win32.whl", hash = "sha256:d3f5614314d758649ab2ab3a62d4f2004c825922f9e370b29416484086b264ec"},
-    {file = "tomli-2.2.1-cp313-cp313-win_amd64.whl", hash = "sha256:a38aa0308e754b0e3c67e344754dff64999ff9b513e691d0e786265c93583c69"},
-    {file = "tomli-2.2.1-py3-none-any.whl", hash = "sha256:cb55c73c5f4408779d0cf3eef9f762b9c9f147a77de7b258bef0a5628adc85cc"},
-    {file = "tomli-2.2.1.tar.gz", hash = "sha256:cd45e1dc79c835ce60f7404ec8119f2eb06d38b1deba146f07ced3bbc44505ff"},
-]
-
 [[package]]
 name = "tomlkit"
 version = "0.13.2"
@@ -6164,5 +6072,5 @@ type = ["pytest-mypy"]
 
 [metadata]
 lock-version = "2.0"
-python-versions = ">=3.9.13,<3.11"
-content-hash = "4b39ee12ca94329b0795cb5c3c0d36685f45cc8a4fe6ad76ed1f092d5f855b9b"
+python-versions = ">=3.11,<3.12"
+content-hash = "68519bb5c9e8a090855dad13454a81ea3b0cff2d59bdf3194195bed77de0725d"
diff --git a/pyproject.toml b/pyproject.toml
index 552792f3..1c372c55 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -13,14 +13,14 @@ create = true
 in-project = true
 
 [tool.poetry.dependencies]
-python = ">=3.9.13,<3.11"
+python = ">=3.11,<3.12"
 cython = "*"
 numpy = "^1.26.0"
 platipy = "*"
 alphashape = "*"
-pandas = "^1.5.3"
+pandas = "^2.2.3"
 scikit-build = "*"
-scipy = "*"
+scipy = "<2.0"
 dicompyler-core = "*"
 # pydicom 3.x has changed some API and dicompyler-core breaks on that
 pydicom = "2.4.4"
@@ -31,13 +31,13 @@ PyWavelets = "1.3.0"
 networkx = "*"
 # pymedphys has reinstated psuedonymisation in 0.39
 # something in OnkoDICOM does a recursive import on pymedphys, so now installing all extras in pymedphys
-pymedphys = { extras = ["all"], version =  "^0.40.0", python = ">=3.9.13,<3.11" }
+pymedphys = { extras = ["all"], version =  "^0.40.0", python = ">=3.9.13,<3.12" }
 # until 20230611, the pyradiomics does not have wheel for py3.10. Will install it with pip later.
 # pyradiomics = [
 #    { version = "==3.0.1", python = "<3.10"},
 #    { version = "==3.0.1", python = ">=3.10"}
 #]
-pyside6 = { version = ">=6.4.0,<6.5", python =">=3.9.13,<3.11" } 
+pyside6 = { version = ">=6.4.0,<6.5", python =">=3.9.13,<3.12" }
 vtk = "*"
 shapely = ">=1.8.1,<2.0"
 python-Levenshtein = "*"
@@ -47,6 +47,8 @@ scikit-learn = "*"
 imblearn = "*"
 kaplanmeier = "*"
 pyinstaller = "*"
+lifelines = "0.29.0"
+
 
 [tool.poetry.group.dev.dependencies]
 pylint = "*"
diff --git a/src/Model/Anon.py b/src/Model/Anon.py
index be4c5dac..ebd06f30 100644
--- a/src/Model/Anon.py
+++ b/src/Model/Anon.py
@@ -276,7 +276,7 @@ def _create_reidentification_spreadsheet(p_name, sha1_p_name, csv_filename):
         )
         # print("Before updating:")
         # print(df_identifier)
-        updated_df = df_identifier.append(sheet, ignore_index=True)
+        updated_df = pd.concat([df_identifier, sheet], ignore_index=True)
         # print("after updating:")
         # print(updated_df)
 
@@ -866,11 +866,11 @@ def anonymize(path, datasets, file_paths, rawdvh):
 
 def anon_file_name(hashed_patient_id):
     """
-    Validate the Anonymous File Name. 
-    Read and modify (if needed) the hashed_patient_id string into a valid string 
+    Validate the Anonymous File Name.
+    Read and modify (if needed) the hashed_patient_id string into a valid string
     for file name (Linux and Windows) by replacing forbidden characters into an
     _ (underscore)
-    
+
     Parameters
     ----------
     hashed_patient_id : ``str``
diff --git a/test/conftest.py b/test/conftest.py
index 83505cd7..5ab0721d 100644
--- a/test/conftest.py
+++ b/test/conftest.py
@@ -29,4 +29,5 @@ def tear_down():
 def qapp_auto():
     app = QApplication(sys.argv)
     yield app
+    app.processEvents()
     app.quit()
diff --git a/test/test_view_iso2roi_gui.py b/test/test_view_iso2roi_gui.py
index 1441908c..792992f2 100644
--- a/test/test_view_iso2roi_gui.py
+++ b/test/test_view_iso2roi_gui.py
@@ -9,6 +9,17 @@
 from pydicom import dcmread
 from pydicom.errors import InvalidDicomError
 
+from PySide6.QtCore import qInstallMessageHandler
+import traceback
+
+
+def qt_message_handler(msg_type, context, message):
+    print(f"Qt Message - Type: {msg_type}")
+    print(f"Context: {context}")
+    print(f"Message: {message}")
+    print(f"Stack trace: {traceback.format_stack()}")
+
+
 def find_DICOM_files(file_path):
     """Function to find DICOM files in a given folder.
     :param file_path: File path of folder to search.
@@ -37,6 +48,7 @@ class TestIso2RoiGui:
     """
 
     __test__ = False
+    qInstallMessageHandler(qt_message_handler)
 
     def __init__(self):
         # Load test DICOM files