error on installing 'netbiov' package

[ojikj2019]

Hello,

When I was running the tutorial scripts for 'Single-cell Gene Set Enrichement Analysis', I got an error message from running, 'BiocManager::install("netbiov")' as below;

---

BiocManager::install("netbiov")
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.2 (2023-10-31)
Installing package(s) 'netbiov'
Installation paths not writeable, unable to update packages
path: /usr/lib/R/library
packages:
boot, cluster, mgcv, nlme
path: /usr/lib/R/site-library
packages:
cli, desc, isoband, matrixStats, pkgbuild, processx, QuickJSR, svglite
Warning message:
package 'netbiov' is not available for Bioconductor version '3.18'

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages

So, could you please help me install the package to do plotting the network?

Best regards,

Jinhong

[gambalab]

It seems it is not using bioconductor repository to find the package, but it uses cran and so the package is not found.

did you try to first update the Bioconductor?

BiocManager::install(ask=FALSE)