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API Reference

Brian Kim edited this page Nov 9, 2023 · 6 revisions

Analyses

Basic functions before analysis to pull out LFP/Spikes

I/O

Input and Output formatting to convert data structures from raw recording traces to structures that are required for other scripts.

Plotting

Plotting Scripts

Utilities

Various utilities that don't have a specific home.

Analyses

  • artifact.py
  • brainstates.py
  • decoders.py
  • laps.py
  • ms_connectivity.py
  • neurons_correlation.py
  • neurons_stability.py
  • oscillations.py
  • placefields.py
  • reactivation.py
  • spkepochs.py
  • time_dependent_placefields.py
  • trace_fc.py
  • animal.py
  • ca_neurons.py
  • datawriter.py
  • epoch.py
  • event.py
  • neurons.py
  • position.py
  • probe.py
  • ratemap.py
  • signal.py

IO

  • binarysignalio.py
  • dlcio.py
  • minianio.py
  • miniscopeio.py
  • movie.py
  • neuroscopeio.py
  • openyphysio.py
  • optitrackio.py
  • phyio.py
  • spykingcircusio.py
  • usvio.py

Plotting

  • ca_events.py
  • dataviz.py
  • epochs.py
  • figure.py
  • placemaps.py
  • position.py
  • probe.py
  • ratemaps.py
  • signals.py
  • spikes.py

Utilities

  • align_util.py
  • ccg.py
  • ccg_gpu.py
  • chunkingData.py
  • colors_util.py
  • debug_helpers.py
  • decoding.py
  • dynamic_container.py
  • efficient_interval_search.py
  • eventCorr.py
  • load_exported.py
  • manipulate_files.py
  • mathuil.py
  • matplotlib_helpers.py
  • minian_util.py
  • miniscope_denoise.py
  • misc.py
  • neurons_util.py
  • plot_util.py
  • position_util.py
  • probe_util.py
  • result_context.py
  • signal_process.py
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