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Brian Kim edited this page Oct 23, 2023 · 7 revisions

NeuroPy is a package for analyzing electrophysiological data using Python. This package is primarily developed for hippocampal recordings, but can also be used for general electrophysiological data.

Requirements

Python 3.9
NumPy 1.20.2
SciPy 1.6.2

How the documentation is organized

User Guide

Getting Started
- Installation
- NeuroPy Quickstart
- NeuroPy: Basics
Fundamentals and Usage
- Coming Soon...
Advanced Usage and Interoperability?
- TBD

API Reference

Analyses
Core
I/O
Plotting
Utilities

Citing This Package

If you use NeuroPy in your research, please consider citing it.

@misc{neuropy2021,
    author       = {Bapun Giri, Nat Kinsky},
    title        = {{NeuroPy: Electrophysiology analysis using Python}},
    year         = 2020--2021,
    version      = {0.0.1},
    url          = {https://github.com/diba-lab/NeuroPy}
    }

Home

User Guide

Installation

API Reference

Analyses

artifact.py
brainstates.py
decoders.py
laps.py
ms_connectivity.py
neurons_correlation.py
neurons_stability.py
oscillations.py
placefields.py
reactivation.py
spkepochs.py
time_dependent_placefields.py
trace_fc.py

Core

animal.py
ca_neurons.py
datawriter.py
epoch.py
event.py
neurons.py
position.py
probe.py
ratemap.py
signal.py

IO

binarysignalio.py
dlcio.py
minianio.py
miniscopeio.py
movie.py
neuroscopeio.py
openyphysio.py
optitrackio.py
phyio.py
spykingcircusio.py
usvio.py

Plotting

ca_events.py
dataviz.py
epochs.py
figure.py
placemaps.py
position.py
probe.py
ratemaps.py
signals.py
spikes.py

Utilities

align_util.py
ccg.py
ccg_gpu.py
chunkingData.py
colors_util.py
debug_helpers.py
decoding.py
dynamic_container.py
efficient_interval_search.py
eventCorr.py
load_exported.py
manipulate_files.py
mathuil.py
matplotlib_helpers.py
minian_util.py
miniscope_denoise.py
misc.py
neurons_util.py
plot_util.py
position_util.py
probe_util.py
result_context.py
signal_process.py

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