diff --git a/desci-server/src/scripts/fixPublish.ts b/desci-server/src/scripts/fixPublish.ts
index 39aa99d9..718883a5 100644
--- a/desci-server/src/scripts/fixPublish.ts
+++ b/desci-server/src/scripts/fixPublish.ts
@@ -116,7 +116,7 @@ async function fixByNodeUuids({
 
       if (invalidateCache) {
         // Invalidate cache for the node once every version is repaired
-        invalidateByUuid({ nodeUuid });
+        await invalidateByUuid({ nodeUuid });
       }
     } catch (e) {
       cLogger.info({ error: e }, `[fixByNodeUuids] Failed`);
diff --git a/desci-server/src/utils/dataRefTools.ts b/desci-server/src/utils/dataRefTools.ts
index 2d41e2d4..72ae1bc6 100644
--- a/desci-server/src/utils/dataRefTools.ts
+++ b/desci-server/src/utils/dataRefTools.ts
@@ -102,7 +102,7 @@ export async function generateDataReferences({
     if (markExternals) {
       dataTree = recursiveFlattenTree(await discoveryLs(dataBucketCid, externalCidMap));
     } else {
-      dataTree = recursiveFlattenTree(await getDirectoryTree(dataBucketCid, externalCidMap, true, false));
+      dataTree = recursiveFlattenTree(await getDirectoryTree(dataBucketCid, externalCidMap, true, true));
     }
   } else {
     const dbTree = await prisma.draftNodeTree.findMany({ where: { nodeId: node.id } });