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r.yml
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# This workflow uses actions that are not certified by GitHub.
# They are provided by a third-party and are governed by
# separate terms of service, privacy policy, and support
# documentation.
#
# See https://github.com/r-lib/actions/tree/master/examples#readme for
# additional example workflows available for the R community.
# on:
# push:
# branches: [main, master]
# pull_request:
# branches: [main, master]
#
# name: R-CMD-check
#
# jobs:
# R-CMD-check:
# runs-on: ${{ matrix.config.os }}
#
# name: ${{ matrix.config.os }} (${{ matrix.config.r }})
#
# strategy:
# fail-fast: false
# matrix:
# config:
# - {os: macos-latest, r: 'release'}
# - {os: windows-latest, r: 'release'}
# - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
# - {os: ubuntu-latest, r: 'release'}
# env:
# GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
# R_KEEP_PKG_SOURCE: yes
#
# steps:
# - uses: actions/checkout@v2
#
# - uses: r-lib/actions/setup-pandoc@v2
#
#
# - name: Setup Python (Only on ubuntu-latest)
# if: matrix.config.os == 'ubuntu-latest'
# uses: actions/setup-python@v2
# with:
# python-version: '3.x'
#
# - name: Install Python venv and dependencies (Only on ubuntu-latest)
# if: matrix.config.os == 'ubuntu-latest'
# run: |
# sudo apt-get update
# sudo apt-get install -y python3-venv
# python -m venv ~/.venv
# echo "RETICULATE_PYTHON=~/.venv/bin/python" >> $GITHUB_ENV
# source ~/.venv/bin/activate
# - uses: r-lib/actions/setup-r@v2
# with:
# r-version: ${{ matrix.config.r }}
# http-user-agent: ${{ matrix.config.http-user-agent }}
# use-public-rspm: true
#
# - name: Install reticulate (Only on ubuntu-latest)
# if: matrix.config.os == 'ubuntu-latest'
# run: |
# Rscript -e "install.packages('reticulate', repos = 'https://cloud.r-project.org/')"
#
# - uses: r-lib/actions/setup-r-dependencies@v2
# with:
# extra-packages: any::rcmdcheck
# needs: check
#
# - uses: r-lib/actions/check-r-package@v2
# with:
# upload-snapshots: true
#
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: macos-latest, r: 'release'}
- {os: windows-latest, r: 'release'}
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-pandoc@v2
- name: Setup Python
uses: actions/setup-python@v2
with:
python-version: '3.9' # Ensure Python 3.x is being used
- name: Check Python Version
run: |
python --version
- name: Install Python dependencies
run: |
python -m pip install --upgrade pip
pip install flair
- name: Setup Python (Only on ubuntu-latest)
if: matrix.config.os == 'ubuntu-latest'
uses: actions/setup-python@v2
with:
python-version: '3.10.13'
- name: Install Python venv and dependencies (Only on ubuntu-latest)
if: matrix.config.os == 'ubuntu-latest'
run: |
sudo apt-get update
sudo apt-get install -y python3-venv
python -m venv ~/.venv
echo "RETICULATE_PYTHON=~/.venv/bin/python" >> $GITHUB_ENV
source ~/.venv/bin/activate
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- name: Install reticulate (Only on ubuntu-latest)
if: matrix.config.os == 'ubuntu-latest'
run: |
Rscript -e "install.packages('reticulate', repos = 'https://cloud.r-project.org/')"
- name: Install Pandoc (Only on Windows)
if: matrix.config.os == 'windows-latest'
run: |
choco install pandoc
- name: Install Python dependencies (Only on Windows)
if: matrix.config.os == 'windows-latest'
run: |
python -m pip install --upgrade pip
pip install scipy==1.12.0 # test
pip install flair
- name: Install Python dependencies (Only on macOS)
if: matrix.config.os == 'macos-latest'
run: |
python -m pip install --upgrade pip
pip install scipy==1.12.0 # test
pip install flair
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: rcmdcheck
# - uses: r-lib/actions/check-r-package@v2
# with:
# upload-snapshots: true