Merge pull request #285 from davidycliao/0.1.7 #125
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| FROM rocker/r-ver:latest | ||
| # Install system dependencies | ||
| RUN apt-get update && apt-get install -y \ | ||
| python3-minimal \ | ||
| python3-pip \ | ||
| python3-venv \ | ||
| libssl-dev \ | ||
| gdebi-core \ | ||
| wget \ | ||
| sudo \ | ||
| curl | ||
| # Create rstudio user | ||
| ARG USER=rstudio | ||
| ARG PASSWORD=rstudio123 | ||
| RUN useradd -m $USER && \ | ||
| echo "$USER:$PASSWORD" | chpasswd && \ | ||
| adduser $USER sudo && \ | ||
| echo "$USER ALL=(ALL) NOPASSWD:ALL" >> /etc/sudoers | ||
| # Install RStudio Server | ||
| RUN wget https://download2.rstudio.org/server/jammy/amd64/rstudio-server-2023.12.1-402-amd64.deb && \ | ||
| gdebi -n rstudio-server-2023.12.1-402-amd64.deb && \ | ||
| rm rstudio-server-*.deb | ||
| # Create and configure Python virtual environment | ||
| RUN python3 -m venv /opt/venv && \ | ||
| chown -R $USER:$USER /opt/venv | ||
| ENV PATH="/opt/venv/bin:$PATH" | ||
| ENV RETICULATE_PYTHON="/opt/venv/bin/python" | ||
| # Setup R environment config | ||
| RUN mkdir -p /usr/local/lib/R/etc && \ | ||
| echo "RETICULATE_PYTHON=/opt/venv/bin/python" >> /usr/local/lib/R/etc/Renviron.site && \ | ||
| echo "options(reticulate.prompt = FALSE)" >> /usr/local/lib/R/etc/Rprofile.site | ||
| # Install Python packages | ||
| RUN /opt/venv/bin/pip install --no-cache-dir \ | ||
| numpy==1.26.4 \ | ||
| scipy==1.12.0 \ | ||
| transformers \ | ||
| torch \ | ||
| flair | ||
| # Install R packages with proper setup | ||
| RUN R -e 'install.packages("reticulate", repos="https://cloud.r-project.org/", dependencies=TRUE)' && \ | ||
| R -e 'if(require(reticulate)) { \ | ||
| Sys.setenv(RETICULATE_PYTHON="/opt/venv/bin/python"); \ | ||
| reticulate::use_python("/opt/venv/bin/python", required=TRUE); \ | ||
| install.packages("remotes", repos="https://cloud.r-project.org/", dependencies=TRUE); \ | ||
| remotes::install_github("davidycliao/flaiR", dependencies=TRUE) \ | ||
| }' | ||
| WORKDIR /home/$USER | ||
| USER $USER | ||
| EXPOSE 8787 | ||
| CMD ["/usr/lib/rstudio-server/bin/rserver", "--server-daemonize=0"] | ||
