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release 0.3.0 #63

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merged 23 commits into from
Aug 21, 2024
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16ec44f
Fixed abs path of bigbedfile
khoroshevskyi Apr 11, 2024
9d2a334
fixed abs
khoroshevskyi Apr 11, 2024
e3a4a66
added heavy argument to pep runner
khoroshevskyi Apr 12, 2024
68dd96e
updated usage
khoroshevskyi Apr 16, 2024
d6e7a02
work towards using geofetch to download files and then classify them …
donaldcampbelljr May 29, 2024
08f96d9
lint
donaldcampbelljr May 29, 2024
8ca32cc
remove pypiper, just use pipestat and pephub
donaldcampbelljr May 29, 2024
fffe63f
add exception handling to bed classifier, re-add pypiper as the pipel…
donaldcampbelljr May 30, 2024
434d182
add exception handling for utf-16 files
donaldcampbelljr May 30, 2024
b2e9b12
clean up bed classifier
donaldcampbelljr May 30, 2024
7cb35e1
Merge pull request #67 from databio/dev_bedclassifier_script
donaldcampbelljr May 30, 2024
07b1ba9
added license to bedboss
khoroshevskyi Jun 3, 2024
040ddac
Merge remote-tracking branch 'origin/dev' into dev
khoroshevskyi Jun 3, 2024
605ff78
added universe to ppipelines
khoroshevskyi Jun 3, 2024
0cbb853
Work on tokenization
khoroshevskyi Jun 6, 2024
bea5288
added tokenized bed functionality
khoroshevskyi Jun 7, 2024
142719c
updated spelling
khoroshevskyi Jun 7, 2024
f53a517
dropped python 3.8
khoroshevskyi Jul 16, 2024
f5be6fb
refgenie fixes
khoroshevskyi Jul 18, 2024
cebaec0
fixed support
khoroshevskyi Jul 20, 2024
9326025
speed up cli help command
khoroshevskyi Aug 12, 2024
0dab4f5
bump version
khoroshevskyi Aug 21, 2024
4301c3d
updated requirements
khoroshevskyi Aug 21, 2024
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Fixed abs path of bigbedfile
khoroshevskyi committed Apr 11, 2024
commit 16ec44f17210e47af4bb1d8e226d558fe0323d0a
2 changes: 1 addition & 1 deletion bedboss/bedmaker/bedmaker.py
Original file line number Diff line number Diff line change
@@ -405,7 +405,7 @@ def make_all(

return BedMakerOutput(
bed_file=output_bed,
bigbed_file=output_bigbed,
bigbed_file=os.path.abspath(output_bigbed),
bed_digest=RegionSet(output_bed).identifier,
bed_type=bed_type,
bed_format=bed_format,