Bed cache #52
Merged
Bed cache #52
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Member
khoroshevskyi
commented
Mar 14, 2024
•
khoroshevskyi
commented
- Added bed caching using bbclient
- Created Uploading class, which handles uploading to pephub, s3, bedbase, and qdrant
- switched uploading to s3 cli to boto3
- Moved uploading from stats model to bedboss
- standardized stats and metadata dicts by using pydantic
- added tracking of uploaded files to s3 to a new column
-
- cleaned repository
- add bedboss tests #27
- Update bedset #50
- Update qdrant #51
- Update cli #53
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.