diff --git a/docs/citations.md b/docs/citations.md index b39ff42..bfa974d 100644 --- a/docs/citations.md +++ b/docs/citations.md @@ -1,11 +1,10 @@ ---- -hide: - - navigation - - toc - - navigation.footer ---- -# How to cite BEDbase and geniml + +# Manuscripts describing BEDbase and geniml + +Components of BEDbase and geniml have been published independently. Here, we showcase the tutorials organized by the manuscript that published them, so if you're reading a paper you can more easily find the relevant features. Find the citation of interest on the left to find links to tutorials published as part of each manuscript. + +## How to cite BEDbase and geniml Thanks for citing us! If you use BEDbase, geniml, or their components in your research, here are papers you can cite. @@ -19,9 +18,6 @@ Thanks for citing us! If you use BEDbase, geniml, or their components in your re | `bedbase` database | Unpublished | - ---- - ## Full citation information for manuscripts
+
+ + + + + +Gtars is a Rust package with Python bindings for genomic interval analysis. + +Coming soon! diff --git a/mkdocs.yml b/mkdocs.yml index c78d1ff..dd316ab 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -109,20 +109,21 @@ nav: - Create evaluation dataset with bedshift: geniml/tutorials/bedshift-evaluation-guide.md - Create search backend: geniml/tutorials/text2bednn-search-interface.md - Reference: - - Published manuscripts: - - Gharavi 2021: geniml/manuscripts/gharavi2021.md - - Rymuza 2024: geniml/manuscripts/rymuza2024.md - - Gharavi 2024: geniml/manuscripts/gharavi2024.md - - LeRoy 2024: geniml/manuscripts/leroy2024.md - - Zheng 2024: geniml/manuscripts/zheng2024.md - How to cite: citations.md - API documentation: geniml/autodoc_build/geniml.md - Support: geniml/support.md - Contributing: geniml/contributing.md - Changelog: geniml/changelog.md - - Genimtools: - - Genimtools: genimtools/README.md - - How to cite: citations.md + - Gtars: + - Gtars: gtars/README.md + - How to cite: + - How to cite: citations.md + - Published manuscripts: + - Gharavi et al. 2021: geniml/manuscripts/gharavi2021.md + - Rymuza et al. 2024: geniml/manuscripts/rymuza2024.md + - Gharavi et al. 2024: geniml/manuscripts/gharavi2024.md + - LeRoy et al. 2024: geniml/manuscripts/leroy2024.md + - Zheng et al. 2024: geniml/manuscripts/zheng2024.md autodoc: jupyter: