fixed unpopulating description from pep 2

databio · Sep 24, 2024 · acc1343 · acc1343
1 parent 041f368
commit acc1343
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Showing 2 changed files with 5 additions and 2 deletions.
diff --git a/bbconf/models/bed_models.py b/bbconf/models/bed_models.py
@@ -33,7 +33,6 @@ class BedFiles(BaseModel):
 
 class BedClassification(BaseModel):
     name: Optional[str] = None
-    description: Optional[str] = None
     genome_alias: str = None
     genome_digest: Union[str, None] = None
     bed_type: str = Field(
@@ -110,6 +109,7 @@ class StandardMeta(BaseModel):
     species_id: str = ""
     genotype: str = Field("", description="Genotype of the sample")
     phenotype: str = Field("", description="Phenotype of the sample")
+    description: Union[str, None] = ""
 
     cell_type: str = Field(
         "",

diff --git a/bbconf/modules/bedfiles.py b/bbconf/modules/bedfiles.py
@@ -507,6 +507,7 @@ def add(
             new_bed = Bed(
                 id=identifier,
                 **classification.model_dump(),
+                description=bed_metadata.description,
                 license_id=license_id,
                 indexed=upload_qdrant,
                 pephub=upload_pephub,
@@ -539,7 +540,9 @@ def add(
                         session.add(new_plot)
 
             new_bedstat = BedStats(**stats.model_dump(), id=identifier)
-            new_metadata = BedMetadata(**bed_metadata.model_dump(), id=identifier)
+            new_metadata = BedMetadata(
+                **bed_metadata.model_dump(exclude={"description"}), id=identifier
+            )
 
             session.add(new_bedstat)
             session.add(new_metadata)