Fixed #66

Fixed #68
databio · Dec 3, 2024 · 3ad2523 · 3ad2523
1 parent 8940fb5
commit 3ad2523
Show file tree

Hide file tree

Showing 3 changed files with 275 additions and 46 deletions.
diff --git a/bbconf/db_utils.py b/bbconf/db_utils.py
@@ -130,6 +130,9 @@ class Bed(Base):
     ref_classifier: Mapped["GenomeRefStats"] = relationship(
         "GenomeRefStats", back_populates="bed", cascade="all, delete-orphan"
     )
+    processed: Mapped[bool] = mapped_column(
+        default=False, comment="Whether the bed file was processed"
+    )
 
 
 class BedMetadata(Base):
@@ -255,6 +258,11 @@ class Files(Base):
     bedfile: Mapped["Bed"] = relationship("Bed", back_populates="files")
     bedset: Mapped["BedSets"] = relationship("BedSets", back_populates="files")
 
+    __table_args__ = (
+        UniqueConstraint("name", "bedfile_id"),
+        UniqueConstraint("name", "bedset_id"),
+    )
+
 
 class BedFileBedSetRelation(Base):
     __tablename__ = "bedfile_bedset_relation"
@@ -350,7 +358,6 @@ class TokenizedBed(Base):
 
     bed: Mapped["Bed"] = relationship("Bed", back_populates="tokenized")
     universe: Mapped["Universes"] = relationship(
-        "Universes",
         "Universes",
         back_populates="tokenized",
         passive_deletes="all",