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AMIP_simulation.md

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example:

export RES=ne30pg2_r05_oECv3 export COMPSET=F20TRC5-CMIP6 export COMPILER=intel export MACH=cori-knl export CASE_NAME=spinup_AMIP_10years.${RES}.${COMPSET}.${COMPILER}

cd /global/u2/d/daleihao/model/e3sm_top_AMIP/cime/scripts ./create_newcase -compset ${COMPSET} -res ${RES} -case ${CASE_NAME} -compiler ${COMPILER} -mach ${MACH} -project m3520 cd ${CASE_NAME}

./xmlchange NTASKS=128,STOP_N=1,STOP_OPTION=nyears,JOB_WALLCLOCK_TIME="20:00:00",RUN_STARTDATE="1980-01-01",REST_N=1,REST_OPTION=nyears,RESUBMIT=10 ./xmlchange CAM_TARGET=theta-l ./xmlchange --id CAM_CONFIG_OPTS --append --val='-cosp' ./xmlchange --id RESUBMIT --val 4

cat >> user_nl_cam << EOF nhtfrq = 0 mfilt = 12 avgflag_pertape = 'A' hist_empty_htapes = .true. fincl1 = 'FLDS','FLNS','FLNSC','FSDS', 'FSNS', 'FSNSC','CLOUDFRAC_CLUBB','SNOWHLND','PRECC','PRECL','PRECSC','PRECSL' ncdata = '/global/u2/d/daleihao/model/data/AMIP/20180316.DECKv1b_A1.ne30_oEC.edison.cam.i.1980-01-01-00000.nc' ieflx_opt = 0 ! =0 AMIP simulations (ocean is prescribed), = 2 for coupled coupled included ocean clubb_c_K10h = 0.30 clubb_c14 = 1.06D0 dust_emis_fact = 1.50D0 linoz_psc_T = 197.5 EOF

cat >> user_nl_clm << EOF check_finidat_year_consistency = .false. fsurdat = "/global/u2/d/daleihao/model/data/AMIP/surfdata_0.5x0.5_simyr1850_c190418.nc" flanduse_timeseries = "/global/u2/d/daleihao/model/data/AMIP/landuse.timeseries_0.5x0.5_hist_simyr1850-2015_c191004.nc" finidat = '/global/u2/d/daleihao/model/data/AMIP/finidat_interp_20180316.DECKv1b_A1.ne30_oEC.edison.clm2.r.1980-01-01-00000_DECKv1.nc' rad_3d_topo = .false. f3dtopo = '' hist_empty_htapes = .true. hist_fincl1 = 'COSZEN', 'ALBD', 'ALBI','FSA','FSR','FSDSND','FSDSNI','FSRND','FSRNI','FSDSVD','FSDSVI','FSRVD','FSRVI','FSH','EFLX_LH_TOT','TSOI_10CM','TV','TG','TSA','QSNOMELT','QRUNOFF','QOVER','PSNSUN','PSNSHA','FPSN','FSNO','SNOWDP','H2OSNO' hist_nhtfrq = 0 hist_mfilt = 12 EOF

./case.setup ./case.build ./case.submit

###########################

export code_root_dir=e3sm_top_AMIP_true mkdir -p $code_root_dir git clone git@github.com:e3sm-project/e3sm $code_root_dir # This will put repository, with all code, in directory $tag_name

Setup git hooks

rm -rf $code_root_dir/.git/hooks git clone git@github.com:e3sm-project/e3sm-Hooks.git $code_root_dir/.git/hooks # checkout with write permission.

git clone git://github.com/ACME-Climate/ACME-Hooks.git .git/hooks # checkout read-only.

cd $code_root_dir git config commit.template $code_root_dir/.git/hooks/commit.template

Bring in MPAS ocean/ice repo

git submodule update --init git checkout --detach

notop

export RES=ne30pg2_r05_oECv3 export COMPSET=F20TRC5-CMIP6 export COMPILER=intel export MACH=compy export CASE_NAME=notop_AMIP_5years.${RES}.${COMPSET}.${COMPILER}

cd ~/e3sm_top_AMIP/cime/scripts ./create_newcase -compset ${COMPSET} -res ${RES} -case ${CASE_NAME} -compiler ${COMPILER} -mach ${MACH} -project ESMD cd ${CASE_NAME}

./xmlchange NTASKS=128,STOP_N=1,STOP_OPTION=nyears,JOB_WALLCLOCK_TIME="20:00:00",RUN_STARTDATE="1985-01-01",REST_N=1,REST_OPTION=nyears ./xmlchange CAM_TARGET=theta-l ./xmlchange --id CAM_CONFIG_OPTS --append --val='-cosp' ./xmlchange --id RESUBMIT --val 4

cat >> user_nl_cam << EOF nhtfrq = 0 mfilt = 1 avgflag_pertape = 'A' hist_empty_htapes = .true. fincl1 = 'FLDS','FLNS','FLNSC','FSDS', 'FSNS', 'FSNSC','CLOUDFRAC_CLUBB','SNOWHLND','PRECC','PRECL','PRECSC','PRECSL' ncdata = '/compyfs/gola749/E3SM_simulations/20180316.DECKv1b_A1.ne30_oEC.edison/archive/rest/1980-01-01-00000/20180316.DECKv1b_A1.ne30_oEC.edison.cam.i.1980-01-01-00000.nc' ieflx_opt = 0 ! =0 AMIP simulations (ocean is prescribed), = 2 for coupled coupled included ocean clubb_c_K10h = 0.30 clubb_c14 = 1.06D0 dust_emis_fact = 1.50D0 linoz_psc_T = 197.5 EOF

cat >> user_nl_clm << EOF check_finidat_year_consistency = .false. fsurdat = "/compyfs/inputdata/lnd/clm2/surfdata_map/surfdata_0.5x0.5_simyr1850_c190418.nc" flanduse_timeseries = "/compyfs/inputdata/lnd/clm2/surfdata_map/landuse.timeseries_0.5x0.5_hist_simyr1850-2015_c191004.nc" finidat = '/compyfs/gola749/E3SM_simulations/20200620.v1like.amip.ne30pg2_r05_oECv3.compy/init/finidat_interp_20180316.DECKv1b_A1.ne30_oEC.edison.clm2.r.1980-01-01-00000_DECKv1.nc' rad_3d_topo = .false. f3dtopo = '' hist_empty_htapes = .true. hist_fincl1 = 'COSZEN', 'ALBD', 'ALBI','FSA','FSR','FSDSND','FSDSNI','FSRND','FSRNI','FSDSVD','FSDSVI','FSRVD','FSRVI','FSH','EFLX_LH_TOT','TSOI_10CM','TV','TG','TSA','QSNOMELT','QRUNOFF','QOVER','PSNSUN','PSNSHA','FPSN','FSNO','SNOWDP','H2OSNO' hist_nhtfrq = 0 hist_mfilt = 1 EOF

./case.setup ./case.build ./case.submit

top

export RES=ne30pg2_r05_oECv3 export COMPSET=F20TRC5-CMIP6 export COMPILER=intel export MACH=compy export CASE_NAME=top_AMIP_5years.${RES}.${COMPSET}.${COMPILER}

cd ~/e3sm_top_AMIP/cime/scripts ./create_newcase -compset ${COMPSET} -res ${RES} -case ${CASE_NAME} -compiler ${COMPILER} -mach ${MACH} -project ESMD cd ${CASE_NAME}

./xmlchange NTASKS=128,STOP_N=1,STOP_OPTION=nyears,JOB_WALLCLOCK_TIME="20:00:00",RUN_STARTDATE="1985-01-01",REST_N=1,REST_OPTION=nyears ./xmlchange CAM_TARGET=theta-l ./xmlchange --id CAM_CONFIG_OPTS --append --val='-cosp' ./xmlchange --id RESUBMIT --val 4

cat >> user_nl_cam << EOF nhtfrq = 0 mfilt = 1 avgflag_pertape = 'A' hist_empty_htapes = .true. fincl1 = 'FLDS','FLNS','FLNSC','FSDS', 'FSNS', 'FSNSC','CLOUDFRAC_CLUBB','SNOWHLND','PRECC','PRECL','PRECSC','PRECSL' ncdata = '/compyfs/gola749/E3SM_simulations/20180316.DECKv1b_A1.ne30_oEC.edison/archive/rest/1980-01-01-00000/20180316.DECKv1b_A1.ne30_oEC.edison.cam.i.1980-01-01-00000.nc' ieflx_opt = 0 ! =0 AMIP simulations (ocean is prescribed), = 2 for coupled coupled included ocean clubb_c_K10h = 0.30 clubb_c14 = 1.06D0 dust_emis_fact = 1.50D0 linoz_psc_T = 197.5 EOF

cat >> user_nl_clm << EOF check_finidat_year_consistency = .false. fsurdat = "/compyfs/inputdata/lnd/clm2/surfdata_map/surfdata_0.5x0.5_simyr1850_c190418.nc" flanduse_timeseries = "/compyfs/inputdata/lnd/clm2/surfdata_map/landuse.timeseries_0.5x0.5_hist_simyr1850-2015_c191004.nc" finidat = '/compyfs/gola749/E3SM_simulations/20200620.v1like.amip.ne30pg2_r05_oECv3.compy/init/finidat_interp_20180316.DECKv1b_A1.ne30_oEC.edison.clm2.r.1980-01-01-00000_DECKv1.nc' rad_3d_topo = .true. f3dtopo = '/qfs/people/haod776/UCLA_3D_Topo_Data/topo_3d_0.5x0.5.nc' hist_empty_htapes = .true. hist_fincl1 = 'COSZEN', 'ALBD', 'ALBI','FSA','FSR','FSDSND','FSDSNI','FSRND','FSRNI','FSDSVD','FSDSVI','FSRVD','FSRVI','FSH','EFLX_LH_TOT','TSOI_10CM','TV','TG','TSA','QSNOMELT','QRUNOFF','QOVER','PSNSUN','PSNSHA','FPSN','FSNO','SNOWDP','H2OSNO' hist_nhtfrq = 0 hist_mfilt = 1 EOF

./case.setup ./case.build ./case.submit

##############################

#!/bin/bash module unload python module load python/2.7.9 ./create_newcase -case FC5AV1C-L_ne4pg2_ne4pg2_20yrs -compset FC5AV1C-L -res ne4pg2_ne4pg2 --handle-preexisting-dirs r cd FC5AV1C-L_ne4pg2_ne4pg2_20yrs

./xmlchange JOB_WALLCLOCK_TIME='08:00:00'

./xmlchange CAM_TARGET=theta-l ./xmlchange --id CAM_CONFIG_OPTS --append --val='-cosp'

./xmlchange --id STOP_OPTION --val 'nyears' ./xmlchange --id STOP_N --val 20

./xmlchange --id REST_OPTION --val 'nyears' ./xmlchange --id REST_N --val 5

./xmlchange --id BUDGETS --val 'true'

./xmlchange --id HIST_OPTION --val 'nyears' ./xmlchange --id HIST_N --val 5

FIXME : Add the variable below back to user_nl_cam

#ncdata = '../init/20171228.beta3rc13_1850.ne30_oECv3_ICG.edison.cam.i.0331-01-01-00000.nc'

cat <> user_nl_cam nhtfrq = 0,-24,-6,-6,-3,-24 mfilt = 1,30,120,120,240,30 avgflag_pertape = 'A','A','I','A','A','A' fexcl1 = 'CFAD_SR532_CAL' fincl1 = 'extinct_sw_inp','extinct_lw_bnd7','extinct_lw_inp','CLD_CAL', 'TREFMNAV', 'TREFMXAV' fincl2 = 'FLUT','PRECT','U200','V200','U850','V850','Z500','OMEGA500','UBOT','VBOT','TREFHT','TREFHTMN','TREFHTMX','QREFHT','TS','PS','TMQ','TUQ','TVQ','TOZ' fincl3 = 'PSL','T200','T500','U850','V850','UBOT','VBOT','TREFHT' fincl4 = 'FLUT','U200','U850','PRECT','OMEGA500' fincl5 = 'PRECT','PRECC' fincl6 = 'CLDTOT_ISCCP','MEANCLDALB_ISCCP','MEANTAU_ISCCP','MEANPTOP_ISCCP','MEANTB_ISCCP','CLDTOT_CAL','CLDTOT_CAL_LIQ','CLDTOT_CAL_ICE','CLDTOT_CAL_UN','CLDHGH_CAL','CLDHGH_CAL_LIQ','CLDHGH_CAL_ICE','CLDHGH_CAL_UN','CLDMED_CAL','CLDMED_CAL_LIQ','CLDMED_CAL_ICE','CLDMED_CAL_UN','CLDLOW_CAL','CLDLOW_CAL_LIQ','CLDLOW_CAL_ICE','CLDLOW_CAL_UN'

ieflx_opt = 2 ! =0 AMIP simulations, = 2 for coupled

clubb_c_K10h = 0.30 clubb_c14 = 1.06D0 dust_emis_fact = 1.50D0 linoz_psc_T = 197.5 EOF

./case.setup ./case.build ./case.submit

AMIP

export RES=ne30pg2_r05_oECv3 export COMPSET=F20TRC5-CMIP6 export COMPILER=intel export MACH=compy export CASE_NAME=test14_AMIP.${RES}.${COMPSET}.${COMPILER}

cd ~/e3sm_top_AMIP_true/cime/scripts ./create_newcase -compset ${COMPSET} -res ${RES} -case ${CASE_NAME} -compiler ${COMPILER} -mach ${MACH} -project ESMD cd ${CASE_NAME}

./xmlchange NTASKS=128,STOP_N=5,STOP_OPTION=ndays,JOB_WALLCLOCK_TIME="4:00:00",RUN_STARTDATE="1985-01-01",REST_N=5,REST_OPTION=ndays ./xmlchange CAM_TARGET=theta-l ./xmlchange --id CAM_CONFIG_OPTS --append --val='-cosp'

cat >> user_nl_cam << EOF nhtfrq = -24 mfilt = 1 avgflag_pertape = 'A' fexcl1 = 'CFAD_SR532_CAL' fincl1 = 'extinct_sw_inp','extinct_lw_bnd7','extinct_lw_inp','CLD_CAL', 'TREFMNAV', 'TREFMXAV' ncdata = '/compyfs/gola749/E3SM_simulations/20180316.DECKv1b_A1.ne30_oEC.edison/archive/rest/1980-01-01-00000/20180316.DECKv1b_A1.ne30_oEC.edison.cam.i.1980-01-01-00000.nc' ieflx_opt = 0 ! =0 AMIP simulations, = 2 for coupled clubb_c_K10h = 0.30 clubb_c14 = 1.06D0 dust_emis_fact = 1.50D0 linoz_psc_T = 197.5 EOF

cat >> user_nl_clm << EOF check_finidat_year_consistency = .false. fsurdat = "/compyfs/inputdata/lnd/clm2/surfdata_map/surfdata_0.5x0.5_simyr1850_c190418.nc" flanduse_timeseries = "/compyfs/inputdata/lnd/clm2/surfdata_map/landuse.timeseries_0.5x0.5_hist_simyr1850-2015_c191004.nc" finidat = '/compyfs/gola749/E3SM_simulations/20200620.v1like.amip.ne30pg2_r05_oECv3.compy/init/finidat_interp_20180316.DECKv1b_A1.ne30_oEC.edison.clm2.r.1980-01-01-00000_DECKv1.nc' rad_3d_topo = .true. f3dtopo = '/qfs/people/haod776/UCLA_3D_Topo_Data/topo_3d_0.5x0.5.nc' hist_empty_htapes = .true. hist_fincl1 = 'COSZEN', 'ALBD', 'ALBI','FSA','FSR','FSDSND','FSDSNI','FSRND','FSRNI','FSDSVD','FSDSVI','FSRVD','FSRVI' hist_nhtfrq = -24 hist_mfilt = 1 EOF

./case.setup ./case.build ./case.submit