_config.yml

# Book settings
# Learn more at https://jupyterbook.org/customize/config.html

title: Image-based Profiling Handbook
author: Beth Cimini, Tim Becker, Shantanu Singh, Gregory Way, Hamdah Abbasi, Callum Tromans-Coia
copyright: ""

# Only build files that are in the ToC
only_build_toc_files: true

# Force re-execution of notebooks on each build.
# See https://jupyterbook.org/content/execute.html
execute:
  execute_notebooks: force

# Define the name of the latex output file for PDF builds
latex:
  latex_documents:
    targetname: book.tex

# Add a bibtex file so that we can create citations
# bibtex_bibfiles:
#   - book.bib

# Information about where the book exists on the web
repository:
  url: https://github.com/cytomining/profiling-handbook  # Online location of your book
  # path_to_book: docs  # Optional path to your book, relative to the repository root
  branch: master  # Which branch of the repository should be used when creating links (optional)

# Add GitHub buttons to your book
# See https://jupyterbook.org/customize/config.html#add-a-link-to-your-repository
html:
  # use_issues_button: true
  use_repository_button: true
  use_edit_page_button: true  

# For .Rmd files in book
# sphinx:
#   config:
#     nb_custom_formats:
#         .Rmd:
#             - jupytext.reads
#             - fmt: Rmd