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ctubbs750/README.md

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About

Hi, I'm Colby!

Languages:

R Python Bash Snakemake

Tools:

Jupyter Notebook Visual Studio Code Pandas matplotlib seaborn scipy statsmodels Plotly Dash Plotly Dash

Projects

  • In-progress | CTCF Binding Site database 3.0

Date: Q1 2025 Repository - Annotations: (GitHub)

Python Bash

Description:

This project ....

Skills:

Data Pipeline | Snakemake

Publications

  • 2025-03
    • Tubbs, C., Benton, M. L., McArthur, E., Capra, J. A. & Ruderfer, D. M. Identifying deleterious noncoding variation through gain and loss of CTCF binding activity. The American Journal of Human Genetics. (Paper)

References

  • Profile page structure inspired by Sam Taylor -> GitHub

Pinned Loading

  1. RuderferLab/CBS_FunctionalAnnotation RuderferLab/CBS_FunctionalAnnotation Public

    Code and data used in publication for Tubbs et al. 2025.

    Jupyter Notebook

  2. cbs-db3-annotate cbs-db3-annotate Public

    Component in the cbs-db multi-repo designed to produce all CTCF Binding Site annotations included in the database.

    Jupyter Notebook 1