fix: admonitions

ctglab · Nov 25, 2024 · 8583484 · 8583484
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diff --git a/docs/hpc.md b/docs/hpc.md
@@ -10,8 +10,8 @@ pip install snakemake-executor-plugin-cluster-generic
 
 Then inside the folder `worflow/profile` you'll find for each of the supported method (SLURM/SGE) two configuration files: one with the string `v8` in the name, used by Snakemake version >8.0.0, and a legacy `config.yaml`, for older versions. 
 
-!!! tip
-  The following notes reported examples using the legacy config file. However, the relevant edits are the same! 
+!!! info
+    The following notes reported examples using the legacy config file. However, the relevant edits are the same! 
 
 ## Singularity args
 
@@ -55,7 +55,7 @@ snakemake --profile workflow/profile/slurm_profile
 ## SGE
 
 !!! warning
-  The support for SGE is still experimental. If you spot any issue, report it in the Github section
+    The support for SGE is still experimental. If you spot any issue, report it in the Github section
 
 A config file for SGE is under `workflow/profile/sge_profile/config.yaml`. The overall scheme is the following
 

diff --git a/docs/resources.md b/docs/resources.md
@@ -32,7 +32,7 @@ ENEO uses also COSMIC, to further annotate known somatic variants with the relev
 
 The configuration script works by controlling the existence of the files whose path is written inside the main configuration file `conf_main.yaml`, located in the `config` folder. If any of those files are already in your machine, just edit the configuration file adding the right *absolute* path. The script will check for its presence without re-downloading it.
 
-!!! warning
+!!! failure
     The annotation for files must be concordant throughout the pipeline, to avoid any error. Be sure to add resources manually only if you're sure of their concordance.