fix: index of STAR with uncompressed genome

ctglab · Dec 18, 2024 · 84eb78f · 84eb78f
1 parent bc68122
commit 84eb78f
Showing 1 changed file with 0 additions and 2 deletions.
diff --git a/workflow/rules/index.smk b/workflow/rules/index.smk
@@ -21,8 +21,6 @@ rule star_index:
         time="6:00:00",
     shell:
         """
-        mkfifo genome
-        zcat {input.fasta} > genome &
         STAR --runMode genomeGenerate --runThreadN {threads} --genomeDir {output} \
         --genomeFastaFiles genome --sjdbOverhang 100 --sjdbGTFfile {input.gtf}"""