Subsampled chr6 from aligned file

ctglab · Sep 3, 2024 · 1780699 · 1780699
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commit 1780699
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diff --git a/.github/workflows/testing.yml b/.github/workflows/testing.yml
@@ -26,12 +26,6 @@ jobs:
     - name: Setup snakemake
       run: |
         mamba install -c conda-forge -c bioconda snakemake singularity sra-tools
-    - name: Download example data
-      run: |
-        wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR969/008/SRR9697628/SRR9697628_1.fastq.gz -O test_data/SRR9697628_1.fastq.gz
-        wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR969/008/SRR9697628/SRR9697628_2.fastq.gz -O test_data/SRR9697628_2.fastq.gz
-
-    - run: echo "Finish installing snakemake"
     - name: Run snakemake
       run: |
         snakemake --use-singularity --use-conda --cores 4
diff --git a/test_data/SRR9697628_1.fastq.gz b/test_data/SRR9697628_1.fastq.gz
diff --git a/test_data/SRR9697628_2.fastq.gz b/test_data/SRR9697628_2.fastq.gz