Disable some unit tests

src/nectarchain/data/container/tests/test_charge.py

@@ -1,173 +1,178 @@
-import glob
+# import glob
 
-import numpy as np
+# import numpy as np
 import pytest
 
-from nectarchain.data.container import ChargesContainer, ChargesContainerIO
-from nectarchain.makers import ChargesMaker
-
-
-def create_fake_chargeContainer():
-    nevents = TestChargesContainer.nevents
-    npixels = TestChargesContainer.npixels
-    rng = np.random.default_rng()
-    return ChargesContainer(
-        pixels_id=np.array([2, 4, 3, 8, 6, 9, 7, 1, 5, 10]),
-        nevents=nevents,
-        npixels=npixels,
-        charges_hg=rng.integers(low=0, high=1000, size=(nevents, npixels)),
-        charges_lg=rng.integers(low=0, high=1000, size=(nevents, npixels)),
-        peak_hg=rng.integers(low=0, high=60, size=(nevents, npixels)),
-        peak_lg=rng.integers(low=0, high=60, size=(nevents, npixels)),
-        run_number=TestChargesContainer.run_number,
-        camera="TEST",
-        broken_pixels_hg=rng.integers(low=0, high=1, size=(nevents, npixels)),
-        broken_pixels_lg=rng.integers(low=0, high=1, size=(nevents, npixels)),
-        ucts_timestamp=rng.integers(low=0, high=100, size=(nevents)),
-        ucts_busy_counter=rng.integers(low=0, high=100, size=(nevents)),
-        ucts_event_counter=rng.integers(low=0, high=100, size=(nevents)),
-        event_type=rng.integers(low=0, high=1, size=(nevents)),
-        event_id=rng.integers(low=0, high=1000, size=(nevents)),
-        trig_pattern_all=rng.integers(low=0, high=1, size=(nevents, npixels, 4)),
-        trig_pattern=rng.integers(low=0, high=1, size=(nevents, npixels)),
-        multiplicity=rng.integers(low=0, high=1, size=(nevents)),
-    )
-
-
-@pytest.disable()
-class TestChargesContainer:
-    run_number = 1234
-    nevents = 140
-    npixels = 10
-
-    # Tests that a ChargeContainer object can be created with valid input parameters.
-    def test_create_charge_container(self):
-        pixels_id = np.array([2, 4, 3, 8, 6, 9, 7, 1, 5, 10])
-        nevents = TestChargesContainer.nevents
-        npixels = TestChargesContainer.npixels
-        run_number = TestChargesContainer.run_number
-        charges_hg = np.random.randn(nevents, npixels)
-        charges_lg = np.random.randn(nevents, npixels)
-        peak_hg = np.random.randn(nevents, npixels)
-        peak_lg = np.random.randn(nevents, npixels)
-        method = "FullWaveformSum"
-        charge_container = ChargesContainer(
-            charges_hg=charges_hg,
-            charges_lg=charges_lg,
-            peak_hg=peak_hg,
-            peak_lg=peak_lg,
-            run_number=run_number,
-            pixels_id=pixels_id,
-            nevents=nevents,
-            npixels=npixels,
-            method=method,
-        )
-
-        assert np.allclose(charge_container.charges_hg, charges_hg)
-        assert np.allclose(charge_container.charges_lg, charges_lg)
-        assert np.allclose(charge_container.peak_hg, peak_hg)
-        assert np.allclose(charge_container.peak_lg, peak_lg)
-        assert charge_container.run_number == run_number
-        assert charge_container.pixels_id.tolist() == pixels_id.tolist()
-        assert charge_container.nevents == nevents
-        assert charge_container.npixels == npixels
-        assert charge_container.method == method
-
-    # Tests that the from_waveforms method can be called with a valid
-    # waveformContainer and method parameter.
-    # def test_from_waveforms_valid_input(self):
-    #    waveform_container = WaveformsContainer(...)
-    #    method = 'FullWaveformSum'
-    #
-    #    charge_container = ChargeContainer.from_waveforms(waveform_container, method)
-    #
-    #    assert isinstance(charge_container, ChargeContainer)
-
-    # Tests that the ChargeContainer object can be written to a file and the file is
-    # created.
-    def test_write_charge_container(self, tmp_path="/tmp"):
-        charge_container = create_fake_chargeContainer()
-        tmp_path += f"/{np.random.randn(1)[0]}"
-
-        ChargesContainerIO.write(tmp_path, charge_container)
-
-        assert (
-            len(
-                glob.glob(
-                    f"{tmp_path}/charge_run{TestChargesContainer.run_number}.fits"
-                )
-            )
-            == 1
-        )
-
-    # Tests that a ChargeContainer object can be loaded from a file and the object is
-    # correctly initialized.
-    def test_load_charge_container(self, tmp_path="/tmp"):
-        charge_container = create_fake_chargeContainer()
-        tmp_path += f"/{np.random.randn(1)[0]}"
-
-        ChargesContainerIO.write(tmp_path, charge_container)
-
-        loaded_charge_container = ChargesContainerIO.load(
-            tmp_path, TestChargesContainer.run_number
-        )
-
-        assert isinstance(loaded_charge_container, ChargesContainer)
-        assert np.allclose(
-            loaded_charge_container.charges_hg, charge_container.charges_hg
-        )
-        assert np.allclose(
-            loaded_charge_container.charges_lg, charge_container.charges_lg
-        )
-        assert np.allclose(loaded_charge_container.peak_hg, charge_container.peak_hg)
-        assert np.allclose(loaded_charge_container.peak_lg, charge_container.peak_lg)
-        assert loaded_charge_container.run_number == charge_container.run_number
-        assert (
-            loaded_charge_container.pixels_id.tolist()
-            == charge_container.pixels_id.tolist()
-        )
-        assert loaded_charge_container.nevents == charge_container.nevents
-        assert loaded_charge_container.npixels == charge_container.npixels
-        assert loaded_charge_container.method == charge_container.method
-
-    # Tests that the ChargeContainer object can be sorted by event_id and the object
-    # is sorted accordingly.
-    def test_sort_charge_container(self):
-        charge_container = create_fake_chargeContainer()
-
-        sorted_charge_container = ChargesMaker.sort(charge_container)
-
-        assert sorted_charge_container.event_id.tolist() == sorted(
-            charge_container.event_id.tolist()
-        )
-
-    # Tests that the run_number, pixels_id, npixels, nevents, method, multiplicity,
-    # and trig_pattern properties of the ChargeContainer object can be accessed and
-    # the values are correct.
-    def test_access_properties(self):
-        pixels_id = np.array([2, 4, 3, 8, 6, 9, 7, 1, 5, 10])
-        nevents = 40
-        npixels = 10
-        charges_hg = np.random.randn(nevents, npixels)
-        charges_lg = np.random.randn(nevents, npixels)
-        peak_hg = np.random.randn(nevents, npixels)
-        peak_lg = np.random.randn(nevents, npixels)
-        run_number = 1234
-        method = "FullWaveformSum"
-        charge_container = ChargesContainer(
-            charges_hg=charges_hg,
-            charges_lg=charges_lg,
-            peak_hg=peak_hg,
-            peak_lg=peak_lg,
-            run_number=run_number,
-            pixels_id=pixels_id,
-            nevents=nevents,
-            npixels=npixels,
-            method=method,
-        )
-
-        assert charge_container.run_number == run_number
-        assert charge_container.pixels_id.tolist() == pixels_id.tolist()
-        assert charge_container.npixels == npixels
-        assert charge_container.nevents == nevents
-        assert charge_container.method == method
+# from nectarchain.data.container import ChargesContainer, ChargesContainerIO
+# from nectarchain.makers import ChargesMaker
+
+pytest.skip(
+    "Some classes to be imported here were dropped from nectarchain,"
+    "skipping all these tests entirely",
+    allow_module_level=True,
+)
+
+
+# def create_fake_chargeContainer():
+#     nevents = TestChargesContainer.nevents
+#     npixels = TestChargesContainer.npixels
+#     rng = np.random.default_rng()
+#     return ChargesContainer(
+#         pixels_id=np.array([2, 4, 3, 8, 6, 9, 7, 1, 5, 10]),
+#         nevents=nevents,
+#         npixels=npixels,
+#         charges_hg=rng.integers(low=0, high=1000, size=(nevents, npixels)),
+#         charges_lg=rng.integers(low=0, high=1000, size=(nevents, npixels)),
+#         peak_hg=rng.integers(low=0, high=60, size=(nevents, npixels)),
+#         peak_lg=rng.integers(low=0, high=60, size=(nevents, npixels)),
+#         run_number=TestChargesContainer.run_number,
+#         camera="TEST",
+#         broken_pixels_hg=rng.integers(low=0, high=1, size=(nevents, npixels)),
+#         broken_pixels_lg=rng.integers(low=0, high=1, size=(nevents, npixels)),
+#         ucts_timestamp=rng.integers(low=0, high=100, size=(nevents)),
+#         ucts_busy_counter=rng.integers(low=0, high=100, size=(nevents)),
+#         ucts_event_counter=rng.integers(low=0, high=100, size=(nevents)),
+#         event_type=rng.integers(low=0, high=1, size=(nevents)),
+#         event_id=rng.integers(low=0, high=1000, size=(nevents)),
+#         trig_pattern_all=rng.integers(low=0, high=1, size=(nevents, npixels, 4)),
+#         trig_pattern=rng.integers(low=0, high=1, size=(nevents, npixels)),
+#         multiplicity=rng.integers(low=0, high=1, size=(nevents)),
+#     )
+
+
+# class TestChargesContainer:
+#     run_number = 1234
+#     nevents = 140
+#     npixels = 10
+#
+#     # Tests that a ChargeContainer object can be created with valid input parameters.
+#     def test_create_charge_container(self):
+#         pixels_id = np.array([2, 4, 3, 8, 6, 9, 7, 1, 5, 10])
+#         nevents = TestChargesContainer.nevents
+#         npixels = TestChargesContainer.npixels
+#         run_number = TestChargesContainer.run_number
+#         charges_hg = np.random.randn(nevents, npixels)
+#         charges_lg = np.random.randn(nevents, npixels)
+#         peak_hg = np.random.randn(nevents, npixels)
+#         peak_lg = np.random.randn(nevents, npixels)
+#         method = "FullWaveformSum"
+#         charge_container = ChargesContainer(
+#             charges_hg=charges_hg,
+#             charges_lg=charges_lg,
+#             peak_hg=peak_hg,
+#             peak_lg=peak_lg,
+#             run_number=run_number,
+#             pixels_id=pixels_id,
+#             nevents=nevents,
+#             npixels=npixels,
+#             method=method,
+#         )
+#
+#         assert np.allclose(charge_container.charges_hg, charges_hg)
+#         assert np.allclose(charge_container.charges_lg, charges_lg)
+#         assert np.allclose(charge_container.peak_hg, peak_hg)
+#         assert np.allclose(charge_container.peak_lg, peak_lg)
+#         assert charge_container.run_number == run_number
+#         assert charge_container.pixels_id.tolist() == pixels_id.tolist()
+#         assert charge_container.nevents == nevents
+#         assert charge_container.npixels == npixels
+#         assert charge_container.method == method
+#
+#     # Tests that the from_waveforms method can be called with a valid
+#     # waveformContainer and method parameter.
+#     # def test_from_waveforms_valid_input(self):
+#     #    waveform_container = WaveformsContainer(...)
+#     #    method = 'FullWaveformSum'
+#     #
+#     #    charge_container = ChargeContainer.from_waveforms(waveform_container, method)
+#     #
+#     #    assert isinstance(charge_container, ChargeContainer)
+#
+#     # Tests that the ChargeContainer object can be written to a file and the file is
+#     # created.
+#     def test_write_charge_container(self, tmp_path="/tmp"):
+#         charge_container = create_fake_chargeContainer()
+#         tmp_path += f"/{np.random.randn(1)[0]}"
+#
+#         ChargesContainerIO.write(tmp_path, charge_container)
+#
+#         assert (
+#             len(
+#                 glob.glob(
+#                     f"{tmp_path}/charge_run{TestChargesContainer.run_number}.fits"
+#                 )
+#             )
+#             == 1
+#         )
+#
+#     # Tests that a ChargeContainer object can be loaded from a file and the object is
+#     # correctly initialized.
+#     def test_load_charge_container(self, tmp_path="/tmp"):
+#         charge_container = create_fake_chargeContainer()
+#         tmp_path += f"/{np.random.randn(1)[0]}"
+#
+#         ChargesContainerIO.write(tmp_path, charge_container)
+#
+#         loaded_charge_container = ChargesContainerIO.load(
+#             tmp_path, TestChargesContainer.run_number
+#         )
+#
+#         assert isinstance(loaded_charge_container, ChargesContainer)
+#         assert np.allclose(
+#             loaded_charge_container.charges_hg, charge_container.charges_hg
+#         )
+#         assert np.allclose(
+#             loaded_charge_container.charges_lg, charge_container.charges_lg
+#         )
+#         assert np.allclose(loaded_charge_container.peak_hg, charge_container.peak_hg)
+#         assert np.allclose(loaded_charge_container.peak_lg, charge_container.peak_lg)
+#         assert loaded_charge_container.run_number == charge_container.run_number
+#         assert (
+#             loaded_charge_container.pixels_id.tolist()
+#             == charge_container.pixels_id.tolist()
+#         )
+#         assert loaded_charge_container.nevents == charge_container.nevents
+#         assert loaded_charge_container.npixels == charge_container.npixels
+#         assert loaded_charge_container.method == charge_container.method
+#
+#     # Tests that the ChargeContainer object can be sorted by event_id and the object
+#     # is sorted accordingly.
+#     def test_sort_charge_container(self):
+#         charge_container = create_fake_chargeContainer()
+#
+#         sorted_charge_container = ChargesMaker.sort(charge_container)
+#
+#         assert sorted_charge_container.event_id.tolist() == sorted(
+#             charge_container.event_id.tolist()
+#         )
+#
+#     # Tests that the run_number, pixels_id, npixels, nevents, method, multiplicity,
+#     # and trig_pattern properties of the ChargeContainer object can be accessed and
+#     # the values are correct.
+#     def test_access_properties(self):
+#         pixels_id = np.array([2, 4, 3, 8, 6, 9, 7, 1, 5, 10])
+#         nevents = 40
+#         npixels = 10
+#         charges_hg = np.random.randn(nevents, npixels)
+#         charges_lg = np.random.randn(nevents, npixels)
+#         peak_hg = np.random.randn(nevents, npixels)
+#         peak_lg = np.random.randn(nevents, npixels)
+#         run_number = 1234
+#         method = "FullWaveformSum"
+#         charge_container = ChargesContainer(
+#             charges_hg=charges_hg,
+#             charges_lg=charges_lg,
+#             peak_hg=peak_hg,
+#             peak_lg=peak_lg,
+#             run_number=run_number,
+#             pixels_id=pixels_id,
+#             nevents=nevents,
+#             npixels=npixels,
+#             method=method,
+#         )
+#
+#         assert charge_container.run_number == run_number
+#         assert charge_container.pixels_id.tolist() == pixels_id.tolist()
+#         assert charge_container.npixels == npixels
+#         assert charge_container.nevents == nevents
+#         assert charge_container.method == method