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Reactome pathway database [data source] #17

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adeffur opened this issue Jun 1, 2020 · 1 comment
Open

Reactome pathway database [data source] #17

adeffur opened this issue Jun 1, 2020 · 1 comment
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Status: Suggested This issue is a suggestion for doing something new or different in CovidGraph Type: Data Source To identify an issue as a data source

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@adeffur
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adeffur commented Jun 1, 2020

https://reactome.org/dev/graph-database

Reactome database for biological pathways. Extensively used in biology. Multiple species. The entire database is available as a neo4j db. Probably easy to integrate with CovidGraph?
@mpreusse
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mpreusse commented Jun 2, 2020

Reactome is a fantastic datasource!

The Neo4j database is not really easy to integrate, it has a very complex datamodel (e.g. described here: https://graphdb-bio.com/projects-using-neo4j-1)

Basic data is included in CovidGraph already: (Gene)-[:MEMBER]-(:Pathway)

@Jiros Jiros reopened this Nov 24, 2020
@Jiros Jiros transferred this issue from covidgraph/documentation Dec 7, 2020
@Jiros Jiros added Type: Data Source To identify an issue as a data source Status: Suggested This issue is a suggestion for doing something new or different in CovidGraph labels Dec 7, 2020
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Status: Suggested This issue is a suggestion for doing something new or different in CovidGraph Type: Data Source To identify an issue as a data source
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