Add entries for pangolin-data/-assignment, update workflows (#553)

* Add entries for pangolin-data/-assignment 1.31

* Get workflows running again
* Remove conda-version setting because it constrained python to 3.10 or 3.11 but that caused a conflict with a pinned python 3.12.
* pangolin_macos.yml needs setup-miniconda@v2 for now because it sets architecture to x86_64, and setup-miniconda@v3 uses arm64 which is not working for usher yet.  pangolin_macos.yml also needs to set miniconda-version to latest so conda installation doesn't fail.

* Add entries for pangolin-data/-assignment 1.32

.github/workflows/pangolin.yml

@@ -12,14 +12,12 @@ jobs:
       matrix:
         os: ["ubuntu-latest"]
     steps:
-      - uses: actions/checkout@v2
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: actions/checkout@v4
+      - uses: conda-incubator/setup-miniconda@v3
         with:
           environment-file: environment.yml
           activate-environment: pangolin
           channels: conda-forge,bioconda,defaults
-          conda-version: "23.5.0"
-          mamba-version: "*"
       - name: Install pangolin
         run: pip install -e .
       - name: Check pangolin version

.github/workflows/pangolin_macos.yml

@@ -12,14 +12,13 @@ jobs:
       matrix:
         os: ["macos-latest"]
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - uses: conda-incubator/setup-miniconda@v2
         with:
           environment-file: environment.yml
           activate-environment: pangolin
           channels: conda-forge,bioconda,defaults
-          conda-version: "23.5.0"
-          mamba-version: "*"
+          miniconda-version: "latest"
       - name: Install pangolin
         run: pip install -e .
       - name: Check pangolin version

pangolin/data/data_compatibility.csv

@@ -1,4 +1,6 @@
 data_source,version,min_pangolin_version,min_scorpio_version
+pangolin-data,1.32,4.3,
+pangolin-data,1.31,4.3,
 pangolin-data,1.30,4.3,
 pangolin-data,1.29,4.3,
 pangolin-data,1.28.1,4.3,
@@ -29,6 +31,8 @@ pangolin-data,1.6,4,
 pangolin-data,1.3,4,
 pangolin-data,1.2.133,4,
 pangolin-data,1.2.127,4,
+pangolin-assignment,1.32,4.3,
+pangolin-assignment,1.31,4.3,
 pangolin-assignment,1.30,4.3,
 pangolin-assignment,1.29,4.3,
 pangolin-assignment,1.28.1,4.3,