pango designation v1.22

Release notes

ed6f4b2 - Cornelius Roemer, 2023-06-26 12:30:46 +0200 : Designate DV.7.1 (S:L455F, S:F456L, Spain/Austria, lineage-proposals#135) with 14 seqs
ca84b09 - Cornelius Roemer, 2023-06-26 12:35:59 +0200 : Designate GW.1 (XBB.1.19.1.1, ORF1a:D264N, N:M322V, China) with 140 seqs
23e89d6 - Cornelius Roemer, 2023-06-26 12:37:30 +0200 : Designate GW.2 (S:D936G, USA) with 100 seqs
83a1f8a - Cornelius Roemer, 2023-06-26 19:51:32 +0200 : Designate GY.1 (XBB.1.16.2.1, S:L84I, ORF1a:A4068S, China, from #2066) with 80 seqs
995d8c2 - Cornelius Roemer, 2023-06-26 20:12:17 +0200 : Designate GY.2 (XBB.1.16.2.2, S:T883I) with 25 seqs
664200c - Cornelius Roemer, 2023-06-26 20:15:56 +0200 : Designate BN.1.2.7 (N:N8S, C16332T, Taiwan, from #1923) with 80 seqs
939990f - Cornelius Roemer, 2023-06-26 20:31:09 +0200 : Designate GJ.1.2 (XBB.2.3.3.1.2, ORF1b:V1110I, from #2059) with 200 seqs
7fed7cc - Cornelius Roemer, 2023-06-28 13:33:09 +0200 : Designate FL.13.2 (S:K356T, China, from #2073) with 30 seqs
20e6497 - Cornelius Roemer, 2023-06-28 13:44:19 +0200 : Designate FL.18 (ORF1a:T2007I) with 800 seqs
c07ae4b - Cornelius Roemer, 2023-06-28 15:55:05 +0200 : Designate FL.18.1 (N:T166I, A27507C, from #2019) with 200 seqs
23cfb26 - Cornelius Roemer, 2023-06-28 16:00:13 +0200 : Designate FL.18.1.1 (S:Y200C, S:478R, Australia/Indonesia) with 20 seqs
8e3e5bb - Cornelius Roemer, 2023-06-28 18:44:32 +0200 : Designate XBB.1.5.88 (C2299T, South Africa) with 200 seqs
d535b36 - Cornelius Roemer, 2023-06-28 18:51:47 +0200 : Designate GZ.1 (XBB.2.3.4.1, S:F186L, India-GJ) with 80 seqs
b45620c - Cornelius Roemer, 2023-06-28 19:30:14 +0200 : Designate HA.1 (XBB.1.5.86.1, S:F456L (22930A), Brazil/Canada) and HA.2 (S:P521S, Brazil) with 50 seqs each
d973087 - Cornelius Roemer, 2023-06-28 19:37:49 +0200 : Designate XBB.1.5.89 (S:478R, S:554A, Canada/Italy/France) with 40 seqs
3e1a8b0 - Cornelius Roemer, 2023-06-28 21:22:02 +0200 : Add extra XBB.1.16.6 designations
aaee4fd - Cornelius Roemer, 2023-06-28 21:23:34 +0200 : Add extra XBB.1.16.9 designations
3c00ba8 - Cornelius Roemer, 2023-06-28 21:24:49 +0200 : Add extra FL.1.5.1 designations
5bb0fae - Cornelius Roemer, 2023-06-28 21:33:51 +0200 : Designate HB.1 (XBB.1.34.2.1, S:F456L (22928C), US/China/Canada, from sars-cov-2-variants/lineage-proposals#217) with 10 seqs
7f13742 - Cornelius Roemer, 2023-06-28 21:41:40 +0200 : Designate EG.2.1 (S:F456L (T22930A), S:V327I, Indonesia/US/Australia) with 5 seqs
c65ee84 - Cornelius Roemer, 2023-06-28 21:48:49 +0200 : Designate HC.1 (XBB.1.5.44.1, S:P631S, USA) with 30 seqs
971191a - Cornelius Roemer, 2023-06-28 21:53:40 +0200 : Designate FL.19 (XBB.1.9.1.18, T2377C) with 500 seqs
80a1671 - Cornelius Roemer, 2023-06-28 22:02:14 +0200 : Designate FU.3 (XBB.1.16.1.3, C11665T, India) with 190 seqs
4dd681b - Cornelius Roemer, 2023-06-28 23:08:12 +0200 : Designate BQ.1.1.79 (S:Q613H, C1594T, C16362T, T24079C, Greece) with 300 seqs
21b34b0 - Cornelius Roemer, 2023-06-29 23:29:20 +0200 : Designate FL.20 (S:F456L (22928C), S:Q52H, Spain, from #2072) with 20 seqs
1a8596e - Cornelius Roemer, 2023-06-29 23:50:07 +0200 : Designate XBB.1.31.1 (S:E553K, Indonesia) with 19 seqs
0dfab29 - Cornelius Roemer, 2023-06-29 23:53:31 +0200 : Designate FL.1.7 (S:478R, S:C1235F, Indonesia) with 30 seqs
33d7bbe - Cornelius Roemer, 2023-06-29 23:58:08 +0200 : Designate FL.1.1.1 (S:A688S, Australia/Mauritius) with 30 seqs
40d135d - Cornelius Roemer, 2023-06-30 00:08:51 +0200 : Designate FL.4.4 (ORF1a:T1542I, T24544C, S:478T (reversion), Indonesia) with 70 seqs
fd41be6 - Cornelius Roemer, 2023-06-30 00:11:54 +0200 : Designate FL.4.5 (ORF8:S67F, ORF1a:D1228G, C23635T) with 600 seqs
02d6085 - Cornelius Roemer, 2023-06-30 00:13:33 +0200 : Designate FL.4.6 (T5098C, C13965T, Australia/China) with 400 seqs
ec23e4a - Cornelius Roemer, 2023-06-30 00:18:40 +0200 : Designate FL.4.1.1 (S:K478R, ORF1a:I2286T, Indonesia/Australia) with 20 seqs
80dc246 - Cornelius Roemer, 2023-06-30 00:20:40 +0200 : Designate FL.4.7 (S:L452R, Singapore) with 20 seqs
6e6ced5 - Cornelius Roemer, 2023-06-30 11:56:49 +0200 : Designate GY.3 (S:M177I, Thailand) with 30 seqs
a76d1de - Cornelius Roemer, 2023-06-30 11:58:02 +0200 : Designate GY.2.1 (S:S255F, South Korea) with 20 seqs
1a630a8 - Cornelius Roemer, 2023-06-30 12:00:44 +0200 : Designate XBB.1.16.12 (S:Q52H, South Korea) with 60 seqs
c411680 - Cornelius Roemer, 2023-06-30 12:02:45 +0200 : Designate XBB.1.16.13 (ORF1a:G519S, ORF1a:G1101D, India) with 300 seqs
51bc6d4 - Cornelius Roemer, 2023-06-30 12:06:48 +0200 : Designate FL.21 (XBB.1.9.1.21, A10564T, South Korea/China) with 300 seqs
00647cb - Cornelius Roemer, 2023-06-30 12:08:34 +0200 : Designate FL.5.1 (S:M177T) with 100 seqs
2504a6d - Cornelius Roemer, 2023-06-30 12:10:57 +0200 : Designate EG.1.4.1 (S:P217L, South Korea) with 80 seqs
317f95f - Cornelius Roemer, 2023-06-30 12:13:20 +0200 : Designate GD.2 (S:L212S, Philippines) with 100 seqs
1809d78 - Cornelius Roemer, 2023-06-30 12:14:42 +0200 : Designate GD.3 (S:F59L, Russia) with 80 seqs
019df7f - Cornelius Roemer, 2023-06-30 12:16:39 +0200 : Designate EG.1.5 (S:S98F, Europe) with 90 seqs
8492ad8 - Cornelius Roemer, 2023-06-30 12:18:32 +0200 : Designate EG.8 (ORF1a:S2303F, Europe) with 130 seqs
73d070d - Cornelius Roemer, 2023-06-30 12:25:53 +0200 : Designate FL.22 (ORF1b:I1416V, T24184C) with 300 seqs
ea90ffe - Cornelius Roemer, 2023-06-30 12:27:24 +0200 : Designate FL.23 (ORF1b:V1132I, Philippines) with 200 seqs
3645109 - Cornelius Roemer, 2023-06-30 12:31:12 +0200 : Designate FY.6 (T2935C, ORF1a:A591V, France) with 180 seqs
01cf28d - Cornelius Roemer, 2023-07-09 15:56:14 +0200 : Designate CM.8.1.5 (S:K150E, S:Y248H, N:A155V, Philippines) with 20 seqs
662800b - Cornelius Roemer, 2023-07-09 16:14:16 +0200 : Designate CK.1.1.1. (S:E654K, G6742T, C8782T, Japan) and CK.1.3 (Mexico, S:F157L, S:G181V)
daeb496 - Cornelius Roemer, 2023-07-09 16:16:58 +0200 : Designate CK.1.4 (C25614T, C10228T, C25824T, C27741T) with 1k seqs
b5aedd0 - Cornelius Roemer, 2023-07-09 16:19:08 +0200 : Designate CK.1.5 (C9118T, C15951T, ORF1a:M3733V, on C25614T branch) with 500 seqs
c65d4df - Cornelius Roemer, 2023-07-09 16:27:05 +0200 : Designate FR.1.4 (A3715G, C15960T, on shared T2372C, C7318T, ORF1a:L293F branch with FR.1.1, China) with 100 seqs
9f92dc5 - Cornelius Roemer, 2023-07-09 16:30:26 +0200 : Designate GQ.1.1 (S:G213E, New Zealand) with 20 seqs
049c18c - Cornelius Roemer, 2023-07-09 16:34:28 +0200 : Designate FK.1.3.1 (S:E583D, Australia) and FK.1.3.2 (C9391T, T13596C, Australia/Japan)
ba63b28 - Cornelius Roemer, 2023-07-09 16:37:43 +0200 : Designate FK.1.5 (G5155A, C12439T, Australia/New Zealand) with 200 seqs
5cd7ffd - Cornelius Roemer, 2023-07-09 16:40:42 +0200 : Designate CJ.1.3.1 (S:R214S, ORF1a:G3578S, South Korea/Japan) with 40 seqs
f0582e1 - Cornelius Roemer, 2023-07-09 16:42:24 +0200 : Designate CJ.1.3.2 (S:D936H, South Korea) with 200 seqs
9e3c876 - Cornelius Roemer, 2023-07-09 19:07:57 +0200 : Designate EU.1.1.3 (S:F157L, Europe) with 60 seqs
c8cadb0 - Cornelius Roemer, 2023-07-09 19:10:44 +0200 : Designate FL.24 (S:Q613H, S:A688V) with 80 seqs
a2a5587 - Cornelius Roemer, 2023-07-09 19:14:23 +0200 : Add extra EG.7 designations
5648ff2 - Cornelius Roemer, 2023-07-10 11:43:01 +0200 : Designate XBB.1.16.14 (S:L452Q, after A11782G, India/France/Canada) with 25 seqs
6a905e3 - Cornelius Roemer, 2023-07-10 12:02:10 +0200 : Designate XBB.1.5.90 (S:P621S, ORF1ab:S6713L, Belgium/France) with 200 seqs
bf7f18a - Cornelius Roemer, 2023-07-10 12:04:27 +0200 : Designate XBB.1.5.91 (S:P621S, USA) with 400 seqs
cbbfabf - Cornelius Roemer, 2023-07-10 12:09:21 +0200 : Designate FL.25 (S:E554K, USA/England) with 120 seqs
83a6944 - Cornelius Roemer, 2023-07-10 12:11:49 +0200 : Designate FL.2.4 (ORF8:S67F, China) with 300 seqs
8a47ca9 - Cornelius Roemer, 2023-07-10 12:15:10 +0200 : Designate XCF.1 (S:F157L, USA) with 10 seqs
9a507d8 - Cornelius Roemer, 2023-07-10 12:16:20 +0200 : Designate XCF.2 (S:S929I, Canada) with 15 seqs
3115358 - Cornelius Roemer, 2023-07-10 12:20:14 +0200 : Designate FL.26 (C22264T) with 300 seqs
c2eaf5e - Cornelius Roemer, 2023-07-10 12:21:11 +0200 : Designate FL.26.1 (S:493L, Sweden) with 40 seqs
5780e06 - Cornelius Roemer, 2023-07-10 12:44:21 +0200 : Designate GK.2 (XBB.1.5.70.2, S:V511I) with 20 seqs
7c2e3c0 - Cornelius Roemer, 2023-07-11 11:16:57 +0200 : Add relevant issues to lineage notes
bb5a2d6 - Cornelius Roemer, 2023-07-11 17:48:45 +0200 : Designate FU.4 (S:Y453F, T29410C) with 12 seqs
4f8b6f0 - Cornelius Roemer, 2023-07-11 17:55:53 +0200 : Designate XBB.1.5.92 (ORF1a:T1168I, Ecuador) with 150 seqs
08e3e8b - Cornelius Roemer, 2023-07-11 18:02:21 +0200 : Designate XBB.1.5.93 (C337T, C19186T, USA, 77 seqs) and HD.1 (S:T346I, USA/Dominican Republic, 10 seqs)
115963b - Cornelius Roemer, 2023-07-13 01:27:06 +0200 : Designate XBB.1.16.15 (S:P521S, T10756C, T14067C, on C27513T branch) with 30 seqs
d951ada - Cornelius Roemer, 2023-07-13 23:41:53 +0200 : Designate GK.1.1 (XBB.1.5.70.1.1, S:T573I, Brazil) with 6 seqs
7afb37c - Cornelius Roemer, 2023-07-13 23:42:53 +0200 : Designate GK.1.2 (XBB.1.5.70.1.2, S:N185D, Brazil) with 7 seqs
fe717fc - Cornelius Roemer, 2023-07-13 23:44:22 +0200 : Designate GK.1.3 (ORF1a:E633A, ORF1b:D1130G, USA/Canada)
5420763 - Cornelius Roemer, 2023-07-13 23:45:59 +0200 : Designate additional GK.1 sequences
80108f5 - Cornelius Roemer, 2023-07-14 00:05:03 +0200 : Designate HE.1 (FE.1.1.1, S:V622I, ORF8:A55V, USA/Puerto Rico) with 180 seqs
c2d2412 - Cornelius Roemer, 2023-07-14 00:08:29 +0200 : Designate FE.1.1.3 (XBB.1.18.1.1.1.3, A24775G, China) with 75 seqs
aa955b5 - Cornelius Roemer, 2023-07-14 00:09:45 +0200 : Designate FE.1.1.4 (XBB.1.18.1.1.1.4, A4336G, T24073C, Brazil) with 50 seqs
c36d5d6 - Cornelius Roemer, 2023-07-14 00:33:35 +0200 : Designate HF.1 (XBB.1.16.13.1, S:K304N, South Korea/Japan) with 140 seqs
df3436b - Cornelius Roemer,...

pango designation v1.21

Release notes

fe4cc44 - Cornelius Roemer, 2023-05-18 21:55:50 +0200 : Update README.md: recommend partial clone to save 15GB
777d3b8 - InfrPopGen, 2023-05-22 14:08:54 +0100 : Added new lineage XBB.1.5.70 from #1982 with 5 new sequence designations, and 0 updated
79816d8 - InfrPopGen, 2023-05-22 14:10:27 +0100 : Merge pull request #2007 from InfrPopGen/master
4803957 - Cornelius Roemer, 2023-05-23 17:17:11 +0200 : Designate FL.4.1 (S:N450I) with 80 sequences
edd71a5 - Cornelius Roemer, 2023-05-23 17:21:00 +0200 : Designate FL.4.2 (ORF1a:T951I, China) with 20 sequences
ee9b439 - Cornelius Roemer, 2023-05-23 17:26:11 +0200 : Add FL.1.4 (S:478R, S:Q1208H, Vietnam, from issue #1985) with 30 seqs
783e229 - Cornelius Roemer, 2023-05-23 17:29:05 +0200 : Designate FL.13 (G4354A) with 1k seqs
bc1a317 - Cornelius Roemer, 2023-05-23 17:31:00 +0200 : Add FL.13.1 (S:A411S, ORF1a:P80S, China, from #1996) with 100 seqs
b7f3d28 - Cornelius Roemer, 2023-05-23 17:35:41 +0200 : Add FL.14 (S:V1122M, C29311T, C22978T, Russia/Finland) with 100 seqs
ac884a4 - Cornelius Roemer, 2023-05-23 17:37:44 +0200 : Add extra GB.1 designations
b30181a - Cornelius Roemer, 2023-05-23 17:41:11 +0200 : Designate GF.1 (XBB.1.5.24.1 with S:E748V, C19524T) with 250 seqs
f8846db - Cornelius Roemer, 2023-05-23 17:45:56 +0200 : Designate GG.1 (XBB.1.5.38.1, S:478R, Europe) with 40 seqs
79c55b3 - Cornelius Roemer, 2023-05-24 11:29:18 +0200 : Add FK.1.3 (ORF1b:M1839I, on C27804T>ORF1b:L2580I>N:G34E branch, Australia) with 100 seqs
30c8269 - Cornelius Roemer, 2023-05-24 11:31:09 +0200 : Add extra FK.1.1 designations that are wrong on the Usher tree
4349543 - Cornelius Roemer, 2023-05-24 11:34:07 +0200 : Add FK.1.4 (S:S704L, on C27804>ORF7a:Y40H branch, Australia) with 60 seqs
1e2e43b - Cornelius Roemer, 2023-05-24 11:36:58 +0200 : Add FK.1.2.1 (ORF1a:T891I, Germany/Denmark/Finland/Austria) with 170 seqs
1321897 - Cornelius Roemer, 2023-05-24 11:51:24 +0200 : Add FY.1.1 (S:A83S, Malaysia/Japan) with 100 seqs
0e8bf36 - Cornelius Roemer, 2023-05-24 11:53:21 +0200 : Add FY.3.1 (S:I210T, China) with 50 seqs
90a5a41 - Cornelius Roemer, 2023-05-24 11:57:08 +0200 : Add lineage XBB.1.41 (S:L335S, S:R403K, S:486P, possibly common in Central/West Africa, from #1997) with 15 seqs
ba1ad48 - Cornelius Roemer, 2023-05-24 11:59:11 +0200 : Add EG.5.2 (N:L161F) with 130 seqs
399b473 - Cornelius Roemer, 2023-05-24 12:00:43 +0200 : Add FY.4.1 (S:S494P, Kenya) with 20 seqs
c5bd894 - Cornelius Roemer, 2023-05-24 12:28:41 +0200 : Fix lineage_notes.txt
893c42c - Cornelius Roemer, 2023-05-25 17:24:33 +0200 : Add XBB.1.5.71 (S:V511I, Spain) with 80 designations
9056350 - Cornelius Roemer, 2023-05-25 17:29:44 +0200 : Add XBB.1.16.7 (S:T732I after T12214C, Singapore/Japan/SouthKorea) with 90 designations
0cb8903 - Cornelius Roemer, 2023-05-26 11:07:14 +0200 : Add XBB.1.16.8 (S:T732I after C28531T, India/USA/China/Australia) with 100 seqs
cd66713 - InfrPopGen, 2023-05-27 11:37:05 +0100 : Fixed typo introduced to lineage_notes.txt entry for FR.1
d7e4664 - InfrPopGen, 2023-05-27 11:38:41 +0100 : Merge pull request #2022 from InfrPopGen/master
981bab4 - InfrPopGen, 2023-05-29 12:53:13 +0100 : Added new lineage FL.15 from #1994 with 53 new sequence designations, and 0 updated designations
bda46e2 - InfrPopGen, 2023-05-29 12:54:52 +0100 : Merge pull request #2026 from InfrPopGen/master
c36901d - Cornelius Roemer, 2023-05-30 10:17:47 +0200 : Designate EG.6 (XBB.1.9.2 with C1684T, Israel) with 250 seqs
d0acddd - Cornelius Roemer, 2023-05-30 10:19:06 +0200 : Designate EG.6.1 (S:456L, Israel/Japan/Canada) with 70 seqs
d0696fb - Cornelius Roemer, 2023-05-30 11:44:42 +0200 : Designate FP.2 (XBB.1.11.1 with S:F186S, ORF1a:V3078I, Indonesia/Malaysia/Singapore) with 70 seqs
b5e3461 - Cornelius Roemer, 2023-05-30 11:46:16 +0200 : Designate FP.3 (XBB.1.11.1.3, S:478R, Indonesia/Malaysia) with 40 seqs
8a1522f - Cornelius Roemer, 2023-05-30 11:49:40 +0200 : Designate FP.4 (XBB.1.11.1.4, C3241T, C2536T, Vietnam/South Korea/Japan) with 150 seqs
4c3870b - Cornelius Roemer, 2023-05-30 11:51:03 +0200 : Designate FP.2.1 (S:478R, ORF1a:I693T, ORF1a:T951A, ORF3a:W149C, Indonesia) with 35 seqs
e6e3ffb - Cornelius Roemer, 2023-05-30 19:33:03 +0200 : Designate XBB.1.16.9 (S:F456L (T22930G), ORF1a:S2500F, Canada/Sweden/SouthKorea/USA) with 10 seqs
ecb7f8c - Cornelius Roemer, 2023-05-30 19:46:24 +0200 : Designate CM.7.1 (S:K147E, Europe) with 20 seqs
300f836 - Cornelius Roemer, 2023-05-30 19:49:09 +0200 : Designate XBB.2.10 (S:Q52H, Latvia/Poland) with 100 seqs
c9a4315 - Cornelius Roemer, 2023-05-30 19:59:37 +0200 : Designate FL.16 (S:478R, ORF1a:P1018T, Indonesia) with 30 seqs
27fc997 - Cornelius Roemer, 2023-05-30 20:07:27 +0200 : Specify nuc mutations for S:F456L in lineage notes (there are 3 options)
ec4edbb - Cornelius Roemer, 2023-05-30 20:10:40 +0200 : Add 456L nuc mutation for EG.6.1 to lineage notes
e2592d6 - Cornelius Roemer, 2023-05-30 21:19:07 +0200 : Redesignate FL.16 as XBB.1.9.7 as it does not have XBB.1.9.1 defining 11956C
b855126 - Cornelius Roemer, 2023-05-31 00:26:50 +0200 : Designate XBB.1.5.72 (S:F456L (T22928C), ORF1a:G445S, T9823C, T10204C, South America) with 30 seqs
b77684a - Cornelius Roemer, 2023-05-31 12:25:08 +0200 : Designate FR.1.1 (S:P82H, ORF1a:L293F, China) with 80 seqs
5bf2295 - Cornelius Roemer, 2023-05-31 12:28:36 +0200 : Designate FR.1.2 (S:R190M, China) with 15 seqs
23a9cbc - Cornelius Roemer, 2023-05-31 12:54:34 +0200 : Designate XBB.1.42 (S:486P, S:Q613H, on ORF1a:T4175I branch with XBB.1.9, Indonesia/Malaysia/China) with 180 seqs
ef3c041 - Cornelius Roemer, 2023-05-31 15:22:43 +0200 : Designate XBB.1.43 (G11071A, Indonesia, from #2015) with 200 seqs
1f78bf8 - Cornelius Roemer, 2023-05-31 15:25:08 +0200 : Designate XBB.1.43.1 (S:486P, ORF1a:A2621V, A20713C, from #2015) with 160 seqs
12f93ab - Cornelius Roemer, 2023-06-01 17:51:20 +0200 : Designate XBB.2.6.1 (S:P521S, Peru, from #1869) with 290 seqs
ec9cb23 - Cornelius Roemer, 2023-06-01 17:58:06 +0200 : Designate GH.1 (XBB.2.6.1 with ORF9b:P51Q, T6895C, T9148C, A15192C, Peru, from #1869) with 230 seqs
05291d7 - Cornelius Roemer, 2023-06-01 18:05:58 +0200 : Designate XBB.2.6.2 (S:T19L, Peru) with 160 seqs
4164f55 - Cornelius Roemer, 2023-06-01 18:16:56 +0200 : Designate XBB.2.3.12 (S:S494P, from #2029) with 60 seqs
a3e16cb - Cornelius Roemer, 2023-06-01 18:27:52 +0200 : Designate XBB.1.5.73 (T28271C, USA/Peru) with 600 seqs
b123380 - Cornelius Roemer, 2023-06-01 18:34:31 +0200 : Designate FD.2.1 (XBB.1.5.15.2.1, ORF1a:D3022N, Peru) with 30 seqs
218f387 - Cornelius Roemer, 2023-06-01 18:39:37 +0200 : Designate XBB.1.5.74 (S:K462R, ORF1b:V728I, Peru, from #1998) with 40 seqs
16473ab - Cornelius Roemer, 2023-06-01 18:47:47 +0200 : Designate XBB.1.5.75 (C3695T, Peru/France) with 450 seqs
e4a9ab4 - Cornelius Roemer, 2023-06-01 19:24:17 +0200 : Designate XBB.1.5.76 (ORF1a:T3696A, Chile) with 650 seqs
b911018 - Cornelius Roemer, 2023-06-01 19:27:51 +0200 : Designate XBB.1.5.77 (T18732C, Colombia/USA) with 1300 seqs
f39a7c6 - Cornelius Roemer, 2023-06-01 19:33:13 +0200 : Designate XBB.1.5.78 (ORF1a:N460D, Mexico) with 250 seqs
0894cc7 - Cornelius Roemer, 2023-06-01 19:38:16 +0200 : Designate XBB.1.5.79 (N:Q260L, Mexico/USA) with 400 seqs
9640b11 - Cornelius Roemer, 2023-06-01 19:44:40 +0200 : Designate XBB.1.5.80 (A16812G, C21812T, USA/Romania) with 500 seqs
b5632de - Cornelius Roemer, 2023-06-01 19:50:39 +0200 : Designate XBB.1.5.81 (S:478R, G4657A, South Africa) with 20 seqs
5d18f8c - InfrPopGen, 2023-06-02 11:47:15 +0100 : Added new lineage GJ.1 from #2005 with 43 new sequence designations, and 2 updated from XBB.2.3.3
3e2dc19 - InfrPopGen, 2023-06-02 11:48:43 +0100 : Merge pull request #2033 from InfrPopGen/master
5ea2b89 - ciscorucinski, 2023-06-04 17:50:13 +0900 : fixed alias irregularity (ec9cb23)
5197b4a - Cornelius Roemer, 2023-06-06 17:09:00 +0200 : Designate FL.1.5 (S:456L (T22928C), ORF1b:K2557R, from #1985 and #2036) with 60 seqs
f231e5e - Cornelius Roemer, 2023-06-06 17:10:38 +0200 : Designate FL.1.5.1 (S:478R, from #2036) with 7 seqs
ed98932 - Cornelius Roemer, 2023-06-06 17:18:23 +0200 : Designate GK.1 (Alias of XBB.1.5.70.1, S:S704L, Brazil, from #2025) with 100 seqs
7c80458 - Cornelius Roemer, 2023-06-06 17:28:03 +0200 : Designate XBB.1.34.1 (S:E554K, ORF1b:P970L) with 20 seqs
ee0c54c - Cornelius Roemer, 2023-06-06 17:30:06 +0200 : Designate XBB.1.34.2 (S:K182I, ORF8:C90F, ORF1a:G989C) with 10 seqs
54905da - Angie Hinrichs, 2023-06-06 11:34:39 -0700 : Merge pull request #2035 from ciscorucinski/master
8f4b2eb - Cornelius Roemer, 2023-06-07 18:10:08 +0200 : Designate XCD (XBB.1*/BQ.1.1.25*, S:R214H, S:478I, Indonesia, from #2042) with 14 seqs
52a02da - Cornelius Roemer, 2023-06-07 18:33:05 +0200 : Designate XBB.8.2 (S:486P, ORF1a:A2529V, Reunion/Mayotte/Mauritius, from #1995) with 25 seqs
368ca3b - Cornelius Roemer, 2023-06-08 13:06:28 +0200 : Fix typo in lineages.csv (XBD -> XCD)
76b33d3 - Cornelius Roemer, 2023-06-09 20:20:19 +0200 : Designate EG.7 (S:R403K, S:L513F, ORF1a:N2531S, Germany/England) with 18 seqs
1e361de - Cornelius Roemer, 2023-06-09 20:27:59 +0200 : Designate GJ.1.1 (XBB.2.3.3.1.1, S:A222V, N:R319H, ORF1a:V1915I) with 30 seqs
71c4692 - Cornelius Roemer, 2023-06-09 20:29:46 +0200 : Designate GJ.2 (XBB.2.3.3.2, S:I1114S, Europe) with 50 seqs
0666c34 - Cornelius Roemer, 2023-06-09 20:39:22 +0200 : Designate FL.1.10.1 (S:E554K, C4234T, South Korea) with 50 seqs
55342b2 - Cornelius Roemer, 2023-06-09 20:47:37 +0200 : Designate XBB.1.41.1 (S:478R, France) with 10 seqs
11dc754 - Cornelius Roemer, 2023-06-09 20:59:34 +0200 : Designate XCE (BQ.1* and FY.1 (XBB.1.22.1.1), Indonesia, South Korea, France, from lineage-proposals#123) with 45 seqs
74eed87 - Cornelius Roemer, 2023-06-09 21:14:25 +0200 : Designate FE.1.1.1 (ORF1a:T999I, North America) with 180 seqs
80ddb92 - Cornelius Roemer, 2023-06-09 21:16:00 +0200 : Design...

pango designation v1.20

Release notes

fd7e152 - Cornelius Roemer, 2023-03-30 23:44:24 +0200 : Added lineage BN.1.3.10 (ORF1a:Q1918R, C13608T) with 40 designations
0574eba - InfrPopGen, 2023-03-31 15:13:51 +0100 : Added new lineage FK.1 from #1718 with 70 new sequence designations, and 89 updated from CH.1.1 and CH.1.1.17
1688362 - InfrPopGen, 2023-03-31 15:15:09 +0100 : Merge pull request #1831 from InfrPopGen/master
9415f0f - InfrPopGen, 2023-04-03 15:41:57 +0100 : Added new lineage BQ.1.1.73 from #1740 with 47 new sequence designations, and 3 updated from BQ.1.1
1d22dbd - InfrPopGen, 2023-04-03 15:43:04 +0100 : Merge pull request #1840 from InfrPopGen/master
d27266d - InfrPopGen, 2023-04-03 17:17:31 +0100 : Added new recombinant lineage XCA from #1752 with 41 new sequence designations, and 0 updated
6b58f62 - Cornelius Roemer, 2023-04-04 16:38:41 +0200 : Added lineage EG.2 (XBB.1.9.2 with S:478R) with 30 designations
9ac4960 - Cornelius Roemer, 2023-04-04 16:40:33 +0200 : Added lineage XBB.1.31 (S:453F and S:478R) with 17 designations
7f8ba07 - Cornelius Roemer, 2023-04-04 16:51:04 +0200 : Fix bug in designation_helper.py when there are no children
a69145a - Cornelius Roemer, 2023-04-04 16:53:58 +0200 : Added lineage XBB.1.32 (ORF1a:E148D) with 90 designations
21b1e91 - Cornelius Roemer, 2023-04-04 16:59:50 +0200 : Added lineage FL.1 (XBB.1.9.1 with S:701V) with 130 designations
57d6cb4 - Cornelius Roemer, 2023-04-04 17:12:31 +0200 : Added lineage XBB.2.3.3 (S:182N) with 30 designations
d68d647 - Cornelius Roemer, 2023-04-04 17:14:14 +0200 : Added lineage XBB.2.3.4 (S:478Q) with 30 designations
ebe33d3 - Cornelius Roemer, 2023-04-04 17:17:11 +0200 : Added lineage XBB.1.5.40 (S:478I) with 30 designations
b03e914 - Cornelius Roemer, 2023-04-04 17:59:13 +0200 : Added lineage FM.1 (BQ.1.1.53 with S:613H) with 150 designations
a53e555 - Cornelius Roemer, 2023-04-04 18:00:14 +0200 : Added lineage FM.2 (BQ.1.1.53 with S:946R) with 180 designations
55d4ad1 - Cornelius Roemer, 2023-04-04 18:25:22 +0200 : Added lineage FL.2 (XBB.1.9.1 with T4579A) with 600 designations
1270406 - InfrPopGen, 2023-04-05 19:13:56 +0100 : Added new lineage BQ.1.1.74 from #1817 with 70 new sequence designations, and 6 updated from BQ.1.1
adfca1a - InfrPopGen, 2023-04-05 19:15:50 +0100 : Merge pull request #1848 from InfrPopGen/master
c29cc87 - Cornelius Roemer, 2023-04-05 21:32:32 +0200 : Sort lineage_notes.txt correctly
b211300 - Cornelius Roemer, 2023-04-05 21:37:02 +0200 : Added lineage FN.1 (BQ.1.1.74 with S:478R) from #1817 with 70 designations
9d23043 - Cornelius Roemer, 2023-04-07 22:07:36 +0200 : Added lineage EG.1.1 (S:V70F) with 50 designations
280fd9a - Cornelius Roemer, 2023-04-07 22:18:06 +0200 : Added lineage XBB.1.28.1 (S:356T) with 50 designations
71514b7 - Cornelius Roemer, 2023-04-07 22:33:57 +0200 : Added lineage CJ.1.2 (ORF1a:L2609F) with 300 designations
c3a167d - Cornelius Roemer, 2023-04-07 22:36:21 +0200 : Added lineage CJ.1.3 (A261G reversion, G4960A, C14790T) with 300 designations
d42820b - Cornelius Roemer, 2023-04-08 15:13:24 +0200 : Added lineage XBF.1.1 (S:P621S) with 60 designations
85d749a - Cornelius Roemer, 2023-04-08 15:16:08 +0200 : Add lineage XBF.10 (S:M153I) with 16 designations
5e62d57 - InfrPopGen, 2023-04-11 11:45:14 +0100 : Added new lineage FP.1 from #1847 with 29 new sequence designations, and 0 updated
6177686 - InfrPopGen, 2023-04-11 11:46:59 +0100 : Merge pull request #1873 from InfrPopGen/master
7921837 - InfrPopGen, 2023-04-11 13:53:41 +0100 : Added new lineage BF.42 from #1855 with 30 new sequence designations, and 0 updated
7b1f1a3 - InfrPopGen, 2023-04-11 13:55:11 +0100 : Merge pull request #1874 from InfrPopGen/master
af07cc3 - InfrPopGen, 2023-04-11 16:08:46 +0100 : Added new lineage CH.1.1.23 from #1862 with 21 new sequence designations, and 3 updated from CH.1.1
8b1904d - InfrPopGen, 2023-04-11 16:09:52 +0100 : Merge pull request #1875 from InfrPopGen/master
e236502 - InfrPopGen, 2023-04-12 11:34:16 +0100 : Added new lineage XBB.2.3.5 from #1846 with 5 new sequence designations, and 0 updated
67245eb - InfrPopGen, 2023-04-12 11:35:15 +0100 : Merge pull request #1880 from InfrPopGen/master
95a25bd - InfrPopGen, 2023-04-13 16:00:49 +0100 : Added new lineage FK.1.1 from #1881 with 0 new sequence designations, and 18 updated from FK.1
52e606d - InfrPopGen, 2023-04-13 16:01:52 +0100 : Merge pull request #1883 from InfrPopGen/master
2797d5f - InfrPopGen, 2023-04-14 14:24:28 +0100 : Added new recombinant lineage XCB from #1668 with 46 new sequence designations, and 0 updated
64db020 - InfrPopGen, 2023-04-14 14:26:07 +0100 : Merge pull request #1887 from InfrPopGen/master
4e851b1 - Cornelius Roemer, 2023-04-17 18:51:31 +0200 : Minor lineage notes improvements
342920d - InfrPopGen, 2023-04-17 19:33:11 +0100 : Added new lineage FQ.1 from #1797 with 40 new sequence designations, and 0 updated
a90bc6b - InfrPopGen, 2023-04-17 19:34:38 +0100 : Merge pull request #1905 from InfrPopGen/master
223d79a - InfrPopGen, 2023-04-18 14:39:54 +0100 : Added new lineage XBB.1.33 from #1879 with 18 new sequence designations, and 0 updated
7066483 - InfrPopGen, 2023-04-18 14:41:15 +0100 : Merge pull request #1912 from InfrPopGen/master
45c0707 - Cornelius Roemer, 2023-04-19 16:24:19 +0200 : Designate lineage XBL.1 (S:V635I) with 50 designations
09f25aa - Cornelius Roemer, 2023-04-19 16:31:16 +0200 : Designate lineages XBL.2 and XBL.3, add extra strains for XBL
b0f4701 - Cornelius Roemer, 2023-04-19 16:52:03 +0200 : Designate lineage XBB.2.3.6 (N:T166I) with 158 sequences
c6afc3c - Cornelius Roemer, 2023-04-19 16:59:23 +0200 : Designate lineage XBB.2.3.7 (ORF1a:T4087I) with 60 designations
7ff92cc - Cornelius Roemer, 2023-04-19 17:02:20 +0200 : Add extra XBB.2.3 to lineages.csv
99ba344 - InfrPopGen, 2023-04-20 19:46:25 +0100 : Added new lineage XBB.1.34 from #1621 with 33 new sequence designations, and 0 updated
ba825c7 - InfrPopGen, 2023-04-20 19:47:30 +0100 : Merge pull request #1926 from InfrPopGen/master
8e6f6dd - InfrPopGen, 2023-04-21 14:12:44 +0100 : Added new lineage FR.1 from #1814 with 244 new sequence designations, and 4 updated from BN.1.2.3
b5780a3 - InfrPopGen, 2023-04-21 14:14:02 +0100 : Merge pull request #1934 from InfrPopGen/master
0ab8a0b - InfrPopGen, 2023-04-21 16:08:47 +0100 : Added new lineage FS.1 from #1816 with 111 new sequence designations, and 24 updated from CH.1.1.12
a2da67c - InfrPopGen, 2023-04-21 16:10:14 +0100 : Merge pull request #1935 from InfrPopGen/master
d6f82ca - InfrPopGen, 2023-04-21 16:12:17 +0100 : Added missing lineages.csv updates for FS.1 from #1816 with 111 new sequence designations, and 24 updated from CH.1.1.12
441061d - InfrPopGen, 2023-04-21 16:14:18 +0100 : Merge pull request #1936 from InfrPopGen/master
f2fa07d - Cornelius Roemer, 2023-04-22 17:42:56 +0200 : Add recombinant XCC (CH.1.1.1/XBB.1.9.1) with 30 designations
c3a7f99 - Cornelius Roemer, 2023-04-22 18:17:57 +0200 : Designate EG.3 (XBB.1.9.2 with ORF1a:L2278F on N:L219F)
8289cb0 - Cornelius Roemer, 2023-04-22 18:20:35 +0200 : Added lineage EG.1.2 (ORF7b:H42Y) with 600 designations
0431660 - Cornelius Roemer, 2023-04-22 18:22:06 +0200 : Added lineage EG.1.3 (C3784T, A6613G) with 500 designations
a03b0dc - Cornelius Roemer, 2023-04-22 18:24:23 +0200 : Added lineage EG.1.4 (ORF1a:S2500F) with 400 designations
242699e - Cornelius Roemer, 2023-04-22 18:32:31 +0200 : Added lineage EG.4 (XBB.1.9.2 with C28651T) with 400 designations
cd5580d - Cornelius Roemer, 2023-04-22 18:37:06 +0200 : Added lineage EG.5 (S:F456L) with 12 designations
2d736bc - Cornelius Roemer, 2023-04-22 18:46:19 +0200 : Added lineage FL.3 (XBB.1.9.1 with T1753C) with 900 designations
90a2ec2 - Cornelius Roemer, 2023-04-22 18:48:48 +0200 : Added lineage FL.4 (XBB.1.9.1 with ORF1b:V1092F) with 400 designations
721729e - Cornelius Roemer, 2023-04-22 18:53:04 +0200 : Added lineage FL.5 (XBB.1.9.1 with N:T362I) with 200 designations
416a59a - Cornelius Roemer, 2023-04-22 19:48:43 +0200 : Added lineage FK.1.2 (ORF1a:L384F, ORF1a:R550H) with 300 designations
85e7c0b - Cornelius Roemer, 2023-04-22 21:00:18 +0200 : Added lineage FT.1 (XBB.1.5.39 with S:I197V) with 300 designations
7820a81 - Cornelius Roemer, 2023-04-22 21:45:29 +0200 : Added lineage XAY.2.3 (ORF1a:A131V) with 150 designations
62fec83 - Cornelius Roemer, 2023-04-22 21:50:59 +0200 : Added lineage XAY.1.1.2 (C14838T) with 35 designations
b119264 - Cornelius Roemer, 2023-04-22 21:55:06 +0200 : Added lineage XAY.1.1.3 (C6040T, C8290T, T15153C) with 50 designations
c93a471 - Cornelius Roemer, 2023-04-22 22:39:41 +0200 : Added lineage XBB.1.16.2 (ORF3a:V13L, ORF1a:P926H) with 200 designations
b75a5d4 - Cornelius Roemer, 2023-04-22 22:42:38 +0200 : Added lineage XBB.1.16.3 (A2893C) with 60 designations
4d852e2 - Cornelius Roemer, 2023-04-22 22:47:06 +0200 : Added lineage FU.1 (XBB.1.16.1 with T3802C) with 150 designations
d0f51a1 - Cornelius Roemer, 2023-04-22 22:49:39 +0200 : Added lineage FU.2 (XBB.1.16.1 with C8692T) with 100 designations
ee79541 - Cornelius Roemer, 2023-04-22 23:09:51 +0200 : Added lineage XBB.1.5.41 (S:V772I, S:P521T) from #1941
81bb097 - Cornelius Roemer, 2023-04-22 23:31:31 +0200 : Added lineage XBB.1.5.42 (S:E281D) with 100 designations from #1933
befe4e2 - Cornelius Roemer, 2023-04-22 23:53:13 +0200 : Added lineage FL.2.1 (C10228T) with 200 designations
68615bb - Cornelius Roemer, 2023-04-22 23:56:39 +0200 : Added lineage FL.2.2 (S:478R) with 15 designations from #1927
b622915 - Cornelius Roemer, 2023-04-23 18:09:33 +0200 : tooling: add --keep-first option to add_to_lineages.sh
052d3f4 - Cornelius Roemer, 2023-04-23 18:10:15 +0200 : Add extra XBC.1.6 designations
6501158 - Cornelius Roemer, 2023-04-23 18:13:07 +0200 : Added lineage XBC.1.6.1 (ORF1b:N498I) with 80 designations
6b0d4fd - Cornelius Roemer, 2023-04-23 18:14:28 +0200 : Added lineage XBC.1.6.2 (ORF1a:D827N) with 35 designations
0c...

pango designation v1.19

Release notes

e531938 - Cornelius Roemer, Wed Mar 29 21:10:18 2023 +0200 : Added lineage FJ.1 (CH.1.1.19 with ORF1a:A1204V) with 180 designations
c78e249 - InfrPopGen, Wed Mar 29 15:42:30 2023 +0100 : Merge pull request #1818 from InfrPopGen/master
2a62dcf - InfrPopGen, Wed Mar 29 15:40:59 2023 +0100 : Added new lineage CH.1.1.22 from #1670 with 7 new sequence designations, and 9 updated from CH.1.1
f692d76 - Cornelius Roemer, Wed Mar 29 01:36:55 2023 +0200 : Added CH.1.1.21 (S:N481Y) from #1799, 50 designations
c578f47 - Cornelius Roemer, Tue Mar 28 23:30:31 2023 +0200 : fix: move "taxon,lineage" back to top
19170f5 - Angie Hinrichs, Tue Mar 28 14:19:23 2023 -0700 : #1776 was for XBB.2.3.2 not XBB.2.3, thanks @Over-There-Is, fixes #1803.
5cf9cd0 - InfrPopGen, Tue Mar 28 16:45:08 2023 +0100 : Merge pull request #1815 from InfrPopGen/master
bac15e0 - InfrPopGen, Tue Mar 28 16:42:35 2023 +0100 : Added new recombinant lineage XBZ from #1666 with 0 new sequence designations, and 238 updated designations
4a522cb - Angie Hinrichs, Mon Mar 27 11:35:36 2023 -0700 : Added 995 designations for the part of BA.5.1.15 that doesn't have C10183T (#1039). Many were previously designated BA.5.1; 20 were previously designated BA.5.1.22, 8 were BA.5.1.3 and 2 were BA.5.1.25 due to having both the defining mutations for those respective lineages and the defining mutation for BA.5.1.15 (C10790T).
385e78d - Cornelius Roemer, Mon Mar 27 04:43:37 2023 +0200 : Added lineage XBB.1.5.39 (ORF1a:M3684T) with 800 designations
37fb661 - Cornelius Roemer, Mon Mar 27 04:40:58 2023 +0200 : Added lineage FH.1 (XBB.1.5.17 with S:T883I) with 140 designations
773437b - Cornelius Roemer, Mon Mar 27 04:36:54 2023 +0200 : Added lineage XBB.1.5.38 (S:I666V, ORF1a:T403I) with 150 designations
7bfbd46 - Cornelius Roemer, Mon Mar 27 04:24:15 2023 +0200 : Added lineage FD.2 (XBB.1.5.15 with S:Q146K) from #1600 with 1000 designations
1d92447 - Cornelius Roemer, Mon Mar 27 04:21:09 2023 +0200 : Added lineage XBB.1.5.37 (S:K1045R) with 300 designations
ea6f34a - Cornelius Roemer, Fri Mar 24 21:11:20 2023 +0100 : Fix typo in lineage notes for mutation of CM.8.1.4 (thanks @FedeGueli)
411700b - Cornelius Roemer, Fri Mar 24 21:06:57 2023 +0100 : Added related issues to lineage notes, thanks @FedeGueli
1ee797a - Cornelius Roemer, Fri Mar 24 21:02:10 2023 +0100 : Add helper scripts to make designation more ergonomic
6dae4b8 - Cornelius Roemer, Fri Mar 24 20:56:54 2023 +0100 : Added lineage BF.5.5 (S:K147N) with 250 designations
0225b01 - Cornelius Roemer, Fri Mar 24 20:53:31 2023 +0100 : Added lineage XBB.2.7.1 (S:Y453F, S:K478Q, Singapore, #1725)
d6fed05 - Cornelius Roemer, Fri Mar 24 20:46:29 2023 +0100 : Added lineage XBB.2.8 (C6968T) with 250 designations
0ce4960 - Cornelius Roemer, Fri Mar 24 20:43:20 2023 +0100 : Added lineage DN.1.1.4 (S:N481S) with 70 designations
1ea0850 - Cornelius Roemer, Fri Mar 24 20:41:37 2023 +0100 : Added lineage DN.1.1.3 (S:S704L) with 100 designations
19d4246 - Cornelius Roemer, Fri Mar 24 19:26:18 2023 +0100 : Added lineage CM.8.1.4 (ORF1a:N2890D) with 86 designations
8ab5b25 - Cornelius Roemer, Fri Mar 24 19:23:35 2023 +0100 : Added lineage CM.8.1.3 (S:Y1272H) with 48 designations
e3c981f - Cornelius Roemer, Fri Mar 24 19:20:30 2023 +0100 : Added lineage CH.1.1.20 (S:T299I, S:R403K, S:D1165G) from #1736
6f71f0c - Cornelius Roemer, Fri Mar 24 19:17:22 2023 +0100 : Added lineage CH.1.1.19 (C2773) with 450 designations
0947ed6 - Cornelius Roemer, Fri Mar 24 19:15:38 2023 +0100 : Added lineage FG.3 (S:I934V) with 75 designations
1cd5d3b - Cornelius Roemer, Fri Mar 24 19:14:29 2023 +0100 : Added lineage FG.2 (S:D178N) with 80 designations
a8a99b5 - Cornelius Roemer, Fri Mar 24 19:12:58 2023 +0100 : Added lineage FG.1 (XBB.1.5.16.1 with S:T284I, S:R403K, S:L513F) from #1751
fb4e8b2 - Cornelius Roemer, Fri Mar 24 19:09:27 2023 +0100 : Added lineage XBF.9 (ORF1b:S1003G) with 90 designations
3dd84ab - Cornelius Roemer, Fri Mar 24 19:06:08 2023 +0100 : Added lineage BQ.1.26.2 (S:F157L) with 90 designations
73062bf - Cornelius Roemer, Fri Mar 24 19:01:46 2023 +0100 : Added lineage BL.1.5 (S:A475V) with 120 designations
fa0fb80 - Cornelius Roemer, Fri Mar 24 18:56:09 2023 +0100 : Added lineage XBB.1.5.36 (C9442T) with 240 designations
2a3dec1 - Cornelius Roemer, Fri Mar 24 18:53:47 2023 +0100 : Added lineage XBB.1.5.35 (S:N978S, USA, from #1699) with 400 designations
8032c82 - Cornelius Roemer, Fri Mar 24 18:46:07 2023 +0100 : Added lineage XBB.1.30 (ORF1b:K2557R) with 150 designations
086bc4f - Cornelius Roemer, Fri Mar 24 18:39:38 2023 +0100 : Added lineage XBB.1.5.34 (ORF1a:T1754I) with 430 designations
94ecd67 - Cornelius Roemer, Fri Mar 24 18:36:59 2023 +0100 : Added lineage XBB.1.29 (ORF1a:L3829F, S:A292S) with 50 designations
5fdd9b0 - Cornelius Roemer, Fri Mar 24 18:33:34 2023 +0100 : Added lineage XBB.1.28 (S:R403K) with 13 designations
884b1f7 - Cornelius Roemer, Fri Mar 24 18:02:06 2023 +0100 : Added lineage CH.1.1.18 (S:K187T) with 150 designations, from #1747
4267069 - Cornelius Roemer, Fri Mar 24 17:58:40 2023 +0100 : Added lineage XBB.2.3 (S:G184V, ORF1a:R2159W) with 50 designations from #1776
c49a12a - Cornelius Roemer, Fri Mar 24 17:57:05 2023 +0100 : Added lineage XBB.2.3.1 (S:D80Y) with 80 designations
b4fb9dd - Cornelius Roemer, Fri Mar 24 17:52:32 2023 +0100 : Added lineages XBB.1.5.31, XBB.1.5.32, XBB.1.5.33
cdcebd4 - Cornelius Roemer, Thu Mar 23 23:42:16 2023 +0100 : Added lineage BN.1.3.9 (S:V83F) with 70 designations
d39dc6f - InfrPopGen, Thu Mar 23 19:22:10 2023 +0000 : Merge pull request #1793 from InfrPopGen/master
7b26841 - InfrPopGen, Thu Mar 23 19:20:43 2023 +0000 : Added new lineage CP.8.1 from #1627 with 0 new sequence designations, and 17 updated from CP.8, and 15 from BA.5.2.6
367c6fb - Cornelius Roemer, Thu Mar 23 18:06:49 2023 +0100 : feat: remove non-GISAID strainnames in deduplicate scripts
034686c - Angie Hinrichs, Wed Mar 22 15:41:25 2023 -0700 : Removed a few more INSDC accessions, all have COG-UK names already in lineages.csv.
10404d2 - Angie Hinrichs, Wed Mar 22 15:29:14 2023 -0700 : Replaced INSDC accessions with names, resolved duplicates. Also removed non-sequence-name "strain".
c0aa9f5 - InfrPopGen, Wed Mar 22 16:13:11 2023 +0000 : Merge pull request #1788 from InfrPopGen/master
f662df7 - InfrPopGen, Wed Mar 22 16:11:44 2023 +0000 : Added new lineage FF.1 from #1523 with 65 new sequence designations, and 0 updated
a354100 - Cornelius Roemer, Wed Mar 22 01:37:41 2023 +0100 : Added lineage XBB.1.5.30 (S:A348T) with 250 designations
1558fa9 - Cornelius Roemer, Wed Mar 22 01:35:08 2023 +0100 : Added lineage XBB.1.5.29 (S:A348V) with 25 designations
ae4a881 - Cornelius Roemer, Wed Mar 22 01:31:23 2023 +0100 : Added lineage FE.1 (XBB.1.18.1 with S:F456L) with 10 designations
9c8e360 - Cornelius Roemer, Wed Mar 22 01:21:33 2023 +0100 : Added lineage FD.1.1 (S:F456L) with 50 designations
eb0ca1d - Cornelius Roemer, Wed Mar 22 01:19:30 2023 +0100 : Added lineage FD.1 (XBB.1.5.15 with ORF7b:E3*) with 150 designations
2961a14 - Cornelius Roemer, Wed Mar 22 01:09:37 2023 +0100 : Added lineage FC.1 (BQ.1.1.72 with S:478R) with 80 designations
70571ac - Cornelius Roemer, Wed Mar 22 01:06:37 2023 +0100 : Added lineage BQ.1.1.72 (ORF1b:D100A) with 700 designations
c1c65a2 - Cornelius Roemer, Wed Mar 22 01:03:59 2023 +0100 : Added lineage FB.2 (S:478R) with 70 designations
80d74a9 - Cornelius Roemer, Wed Mar 22 01:02:25 2023 +0100 : Added lineage FB.1 (BQ.1.2.1 with S:D253G) with 25 designations
fbe7ed4 - Cornelius Roemer, Wed Mar 22 00:57:49 2023 +0100 : Added lineage DR.2 (BQ.1.1.3 with S:478R) with 70 designations
ff7b395 - Cornelius Roemer, Wed Mar 22 00:54:41 2023 +0100 : Added lineage FA.2 (BQ.1.1.10 with S:T323I) with 100 designations
92524ad - Cornelius Roemer, Wed Mar 22 00:53:35 2023 +0100 : Added lineage FA.1 (BQ.1.1.10 with S:478R) with 100 designations
115a58a - Cornelius Roemer, Wed Mar 22 00:49:51 2023 +0100 : Added lineage BE.13 (S:346T, S:478R) with 110 designations
df35dea - Cornelius Roemer, Wed Mar 22 00:46:41 2023 +0100 : Added lineage BE.12 (C10834T, T18975C, A29359G) with 300 designations
cc043ad - Cornelius Roemer, Wed Mar 22 00:42:03 2023 +0100 : Added lineage BE.11 (T3049C) with 1000 designations
af92f39 - Cornelius Roemer, Wed Mar 22 00:19:03 2023 +0100 : Added lineage XBB.1.5.28 (S:478R on 17124C polytomy) with 50 designations
29a8c5e - Cornelius Roemer, Wed Mar 22 00:15:20 2023 +0100 : Added lineage EK.2.1 (S:478R) with 35 designations
cb29522 - Cornelius Roemer, Wed Mar 22 00:13:29 2023 +0100 : Added lineage EK.3 (S:P251S) with 130 designations
32848ee - Cornelius Roemer, Wed Mar 22 00:09:05 2023 +0100 : Added lineage XBB.1.5.27 (S:K478R) with 60 designations
39015b3 - Cornelius Roemer, Wed Mar 22 00:06:10 2023 +0100 : Added lineage XBB.1.16.1 (S:T547I) with 60 designations
3ba50f5 - Cornelius Roemer, Wed Mar 22 00:04:09 2023 +0100 : Added lineage XBB.1.27 (S:478R, S:A890V) with 20 designations
42f97a9 - Cornelius Roemer, Tue Mar 21 23:54:35 2023 +0100 : Added lineage EZ.1 (BQ.1.1.43 with S:S247N, S:Y248S) with 50 designations
764d273 - Cornelius Roemer, Tue Mar 21 23:50:56 2023 +0100 : Added lineage EY.1 (EF.1.1.1 with S:Q613H) with 150 designations
911be60 - Cornelius Roemer, Tue Mar 21 23:42:28 2023 +0100 : Added lineage EW.3 (S:A348S) with 50 designations
c433f46 - Cornelius Roemer, Tue Mar 21 23:40:10 2023 +0100 : Added lineage EW.2 (S:A701V) with 200 designations
49a6cbb - Cornelius Roemer, Tue Mar 21 23:38:17 2023 +0100 : Added lineage EW.1 (BQ.1.1.38 with S:478R) with 80 designations
bd69c9c - Cornelius Roemer, Tue Mar 21 23:34:53 2023 +0100 : Added lineage EV.1 (BQ.1.1.71 with S:248H) with 15 designations
6419f4a - Angie Hinrichs, Mon Mar 20 15:45:07 2023 -0700 : Removing incomplete sequence name.
f19893e - Angie Hinrichs, Mon Mar 20 15:15:28 2023 -0700 : Updating some names that ha...

pango designation v1.18.1

e22f5df - InfrPopGen, Tue Feb 14 15:43:08 2023 +0000 : Merge pull request #1657 from InfrPopGen/master
4008ec0 - InfrPopGen, Tue Feb 14 15:42:02 2023 +0000 : Added new lineage BA.5.2.63 from #1636 with 111 new sequence designations, and 0 updated
36a888f - Cornelius Roemer, Mon Feb 13 18:32:41 2023 +0100 : Withdraw BF.7.25 due to being defined by pangolin masked site
96691b9 - Cornelius Roemer, Mon Feb 13 18:09:25 2023 +0100 : Improved notes
69f1d2d - Cornelius Roemer, Mon Feb 13 13:41:41 2023 +0100 : Fix typos in lineage notes, thanks @DoropFan
02021bd - Josh Levy, Sun Feb 12 09:04:43 2023 -0800 : EB has incorrect alias (#1649)
cb2e940 - Cornelius Roemer, Sun Feb 12 14:28:21 2023 +0100 : Added lineages EE.5, EF.1 (BQ.1.1.13.1), EF.1.1, EF.1.1.1, EF.1.2, EF.1.3, EF.2
8b0a890 - Cornelius Roemer, Sun Feb 12 14:12:46 2023 +0100 : Added lineage EE.4 (S:Q52H) with 150 designations
fbed65c - Cornelius Roemer, Sun Feb 12 14:10:37 2023 +0100 : Added lineage BQ.1.1.4 with 500 designations
3974265 - Cornelius Roemer, Sun Feb 12 14:08:56 2023 +0100 : Added lineage EE.2 (ORF1b:V1538I) with 700 designations
55c6219 - Cornelius Roemer, Sun Feb 12 14:07:06 2023 +0100 : Added lineage EE.1 (N:T366I) with 800 designations
da0fbbd - Cornelius Roemer, Sun Feb 12 14:04:52 2023 +0100 : Added lineage ED.3 (S:D843N) with 120 designations
bb7eae7 - Cornelius Roemer, Sun Feb 12 14:02:17 2023 +0100 : Added lineage ED.2 (ORF1a:D928Y) with 700 designations
60a026d - Cornelius Roemer, Sun Feb 12 14:00:35 2023 +0100 : Added lineage ED.1 with 2000 (ORF3a:L108F, ORF1a:C433S) designations
96e9d5f - Cornelius Roemer, Sun Feb 12 02:37:39 2023 +0100 : Add defining mutation of BQ.1.1.52 to lineage notes
01d34e6 - Cornelius Roemer, Sun Feb 12 02:23:27 2023 +0100 : Added lineages BF.7.19.1 and BF.7.26 and fixed bug in lineages.csv
e4a3431 - Cornelius Roemer, Sun Feb 12 01:58:43 2023 +0100 : Added lineage BF.7.25 with 500 designations
75b9a21 - Cornelius Roemer, Sun Feb 12 01:56:34 2023 +0100 : Added lineage BF.7.24 with 1500 designations
6e7df40 - Cornelius Roemer, Sun Feb 12 01:54:03 2023 +0100 : Added lineage BF.7.23 (ORF1b:T239I) with 1000 designations
856e75a - Cornelius Roemer, Sun Feb 12 01:52:01 2023 +0100 : Added lineage BF.7.22 (ORF8:V81I) with 1500 designations
b5a8e51 - Cornelius Roemer, Sun Feb 12 01:49:35 2023 +0100 : Added lineage BF.7.21 with 2000 designations
88cb887 - Cornelius Roemer, Sun Feb 12 01:47:38 2023 +0100 : Added lineage BF.7.20 with 2000 designations
5d625e2 - Cornelius Roemer, Sun Feb 12 01:45:51 2023 +0100 : Added lineage BF.7.19 (ORF7a:R118S) with 1700 designations
02161a1 - Cornelius Roemer, Sun Feb 12 01:16:58 2023 +0100 : Added lineage BA.5.2.62 (S:A653V) with 300 designations
a56a2c1 - Cornelius Roemer, Sun Feb 12 01:05:01 2023 +0100 : Added lineage BA.5.2.61 (S:N450D) with 150 designations
74b20fe - Cornelius Roemer, Sun Feb 12 01:02:22 2023 +0100 : Added lineage BZ.2 (BA.5.2.3 with S:N450D) with 150 designations
f8bc66a - Cornelius Roemer, Sun Feb 12 00:56:23 2023 +0100 : Added lineage BA.5.2.60 (S:N450D) with 300 designations
1a27750 - Cornelius Roemer, Sun Feb 12 00:51:03 2023 +0100 : Added extra BA.5.2.32 designations
30772e4 - Cornelius Roemer, Sun Feb 12 00:47:44 2023 +0100 : Reselected BA.5.2.52 strains as there was a potential bug in them
0266194 - Cornelius Roemer, Sun Feb 12 00:05:18 2023 +0100 : Add issues to lineages
0217088 - Cornelius Roemer, Sat Feb 11 19:12:04 2023 +0100 : Added lineage CZ.2 (BQ.1.1.1.2, S:A688V) with 400 designations
034a603 - Cornelius Roemer, Sat Feb 11 19:08:42 2023 +0100 : Added lineages BQ.1.1.69 (ORF1b:S2027L) and BQ.1.1.70 (ORF1a:A903V, M:S212G)
3f422d7 - Cornelius Roemer, Sat Feb 11 19:04:57 2023 +0100 : Added lineage BQ.1.1.68 and DT.3 (BQ.1.1.32 with S:L176F)
8c6f04c - Cornelius Roemer, Sat Feb 11 19:00:21 2023 +0100 : Added lineage BQ.1.1.67 (S:L176F) with 700 designations
8bd01d1 - Cornelius Roemer, Sat Feb 11 18:54:07 2023 +0100 : Added lineage BQ.1.1.66 (S:K147N) with 100 designations
08f564a - Cornelius Roemer, Sat Feb 11 18:50:09 2023 +0100 : Added lineages BQ.1.1.64 (S:F186S) and BQ.1.1.65 (S:K147I)
4305e5f - Cornelius Roemer, Sat Feb 11 18:39:16 2023 +0100 : Added lineage BQ.1.1.63 (S:Y248H) with 250 designations
7834d48 - Cornelius Roemer, Sat Feb 11 18:34:54 2023 +0100 : Added lineages BQ.1.1.61 (S:P621H) and BQ.1.1.62 (S:P621S)
ced8155 - Cornelius Roemer, Sat Feb 11 18:30:47 2023 +0100 : Added lineages BQ.1.1.58 (S:I934V), BQ.1.1.59 (S:T732I) and BQ.1.1.60 (S:S691F)
d502042 - Cornelius Roemer, Sat Feb 11 18:20:11 2023 +0100 : Added lineages BQ.1.1.56 (S:H1101Y) and BQ.1.1.57 (S:S256A)
46e57d1 - Cornelius Roemer, Sat Feb 11 18:16:34 2023 +0100 : Added lineages BQ.1.1.54 (S:F186S, N:A211T) and BQ.1.1.55 (S:K1149R)
9590884 - Cornelius Roemer, Sat Feb 11 18:06:30 2023 +0100 : Added lineage BQ.1.1.53 (S:N185D) with 280 designations
a588301 - Cornelius Roemer, Sat Feb 11 18:00:51 2023 +0100 : Addedl lineage BQ.1.10.3 (S:K147E) with 100 designations
5388f08 - Cornelius Roemer, Sat Feb 11 17:58:02 2023 +0100 : Added lineage BQ.1.31 (S:K147E) with 300 designations
638d7d3 - Cornelius Roemer, Sat Feb 11 17:52:51 2023 +0100 : Added lineages BQ.1.30 (S:V445A), EC.1 (BQ.1.10.1 with S:Q613H) and EC.1.1 (S:V445A)
c1a359b - Cornelius Roemer, Sat Feb 11 17:09:27 2023 +0100 : Added lineages BA.5.2.58 (S:R346S on branch) and BA.5.2.59 (S:V1264L)
b51a617 - Cornelius Roemer, Sat Feb 11 17:04:11 2023 +0100 : Added lineage BA.5.2.57 (S:R346S) with 1400 designations
44b29c2 - Cornelius Roemer, Sat Feb 11 16:59:06 2023 +0100 : Added lineages BA.5.2.53 (S:A653V), BA.5.2.54 (S:N450D), BA.5.2.55, BA.5.2.56 (S:K444M)
8e63ff9 - Cornelius Roemer, Sat Feb 11 16:40:08 2023 +0100 : Added lineages BA.5.2.51 (S:K444R) and BA.5.2.52 (S:N450D)
3e600c1 - Cornelius Roemer, Sat Feb 11 16:34:07 2023 +0100 : Added extra designations for BA.5.2.50
f8d3387 - Cornelius Roemer, Sat Feb 11 16:29:54 2023 +0100 : Added lineages BF.41 (ORF7b:A43V) and BF.41.1 (S:R346T)
fd9b853 - Cornelius Roemer, Sat Feb 11 16:24:47 2023 +0100 : Added lineage BF.40 (S:V445A) with 200 designations
87e883b - Cornelius Roemer, Sat Feb 11 16:21:36 2023 +0100 : Added lineages BF.39 (S:G181V) and BF.39.1 (S:V445A, S:N450D)
c0130b5 - Cornelius Roemer, Sat Feb 11 16:15:56 2023 +0100 : Added lineages BF.38, BF.38.1(S:Q1201K), BF.38.2 (S:V445A), BF.38.3 (S:P1162S)
769c65b - Cornelius Roemer, Sat Feb 11 16:07:26 2023 +0100 : Added lineage BF.37 (ORF1a:S994L, S:G446D) with 300 designations
a664764 - Cornelius Roemer, Sat Feb 11 16:03:08 2023 +0100 : Added lineage BF.36 (ORF1a:S166G,ORF1b:S1273L,ORF1b:A1428V) with 2000 designations
1353f2f - Cornelius Roemer, Sat Feb 11 15:49:42 2023 +0100 : Added lineage BF.35 (S:N450D) with 130 designations
3a31d63 - Cornelius Roemer, Sat Feb 11 15:46:25 2023 +0100 : Added lineages BF.7.17 (S:A688V, S:G1167S) and BF.7.18 (S:K97N)
e55f0c3 - Cornelius Roemer, Sat Feb 11 15:39:01 2023 +0100 : Added lineages BF.7.16 (ORF1a:A498V) and BF.7.16.1 (S:A688V)
da048f5 - Cornelius Roemer, Sat Feb 11 15:14:59 2023 +0100 : Added lineages BA.5.1.36 (S:R346T & S:G261V) and BA.5.1.37 (S:R346T & S:Y248N)
f42fbf1 - Cornelius Roemer, Sat Feb 11 14:44:06 2023 +0100 : Added lineages BA.5.1.35 (ORF1a:I1525M) and EB.1 (BA.5.1.35 with S:R346T)
0f855a4 - Cornelius Roemer, Sat Feb 11 14:35:35 2023 +0100 : Added lineage BA.5.1.34 (S:P1162S) with 1400 designations
b500c69 - Cornelius Roemer, Sat Feb 11 14:32:19 2023 +0100 : Added lineage BA.5.1.33 (S:V1264L) with 1000 designations
3a42a0a - Cornelius Roemer, Sat Feb 11 14:27:05 2023 +0100 : Added lineages CL.1.1 (S:P1162L), CL.1.2 (S:T883I) and CL.1.3 (S:S71F)
c3b75ce - Cornelius Roemer, Sat Feb 11 02:35:25 2023 +0100 : Added lineage BQ.1.10.2 (S:T523N) with 250 designations
b726213 - Cornelius Roemer, Sat Feb 11 02:20:19 2023 +0100 : Added lineages EA.1 (ORF8:C102F/ins_S:247:SKWL) and EA.2 (S:T470I)
68b7875 - Cornelius Roemer, Sat Feb 11 02:16:02 2023 +0100 : Added lineage BQ.1.1.52 with 1000 designations
e16b4b9 - Cornelius Roemer, Sat Feb 11 02:06:15 2023 +0100 : Added lineage BQ.1.15.1 and BQ.1.15.2 (both with ins_S:247:SKWL)
504a2be - Cornelius Roemer, Sat Feb 11 01:57:00 2023 +0100 : Added lineage BQ.1.29 (S:E554Q) with 70 designations
e559fb0 - Cornelius Roemer, Sat Feb 11 01:39:49 2023 +0100 : Added lineages BW.1.1.1 (ORF1a:L864F) and BW.1.1.2 (ORF1b:P1101S)
80d36bc - Cornelius Roemer, Sat Feb 11 01:17:24 2023 +0100 : Added lineage XAY.1.1.1 (S:D1153Y) from #1569 with 20 designations
1dcf0fe - Cornelius Roemer, Sat Feb 11 01:08:56 2023 +0100 : Added lineages XAY.2.1 (N:T24A) and XAY.2.2 (ORF1a:N447S)
d3a59d8 - Cornelius Roemer, Sat Feb 11 00:53:31 2023 +0100 : Added lineage XBC.1.4 (S:G184S) with 30 designations
045fbf4 - Cornelius Roemer, Sat Feb 11 00:51:57 2023 +0100 : Added lineage XBC.1.3 with 80 designations
6bf3629 - Cornelius Roemer, Sat Feb 11 00:24:39 2023 +0100 : Added lineages XBF.2 (ORF8:V62A) and XBF.3 (ORF1a:V274I)
c14ed8f - Cornelius Roemer, Sat Feb 11 00:07:44 2023 +0100 : Added lineage XBF.1 (S:S939F) with 30 designations
0cfc348 - Cornelius Roemer, Fri Feb 10 23:49:14 2023 +0100 : Added lineage BQ.1.1.51 (ORF3a:L101F) with 1000 designations
c30d608 - Cornelius Roemer, Fri Feb 10 23:42:22 2023 +0100 : Added lineage XBB.1.14 (S:G75V, S:E554K) with 30 designations
05bd633 - Cornelius Roemer, Fri Feb 10 23:36:50 2023 +0100 : Added lineage BF.5.4 (ORF1a:K3839R) with 1700 designations
0456a36 - InfrPopGen, Fri Feb 10 15:01:04 2023 +0000 : Merge pull request #1645 from InfrPopGen/master
f261970 - InfrPopGen, Fri Feb 10 14:59:50 2023 +0000 : Added new lineage BQ.1.1.50 from #1577 with 39 new sequence designations, and 0 updated
649f695 - Cornelius Roemer, Fri Feb 10 14:10:26 2023 +0100 : Added lineage XBB.1.13 (S:S490P) with 80 designations from #1487
7c58a3c - Cornelius Roemer, Fri Feb 10 14:04:43 2023 +0100 : Added lineage XBB.1.5.10 (S:F456L) with 50 designations from #1614
...

pango designations v1.18

Release notes

cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
cdbb3a8 - InfrPopGen, Fri Jan 6 17:30:30 2023 +0000 : Merge pull request #1527 from InfrPopGen/master
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 13...

pango designations v1.17

Notes

lineage	designation date
BQ.1.22	2022-11-02
BF.7.4.2	2022-11-02
CP.1.2	2022-11-02
CP.1.3	2022-11-02
CP.2	2022-11-02
CP.3	2022-11-02
CP.4	2022-11-02
CP.5	2022-11-02
CP.6	2022-11-02
CR.1.1	2022-11-02
BS.1.2	2022-11-02
CM.5.1	2022-11-02
BL.5	2022-11-02
XAY.1.1	2022-11-03
BQ.1.1.20	2022-11-03
BQ.1.1.21	2022-11-03
BQ.1.1.22	2022-11-03
CZ.1	2022-11-03
XBB.4.1	2022-11-03
BQ.1.23	2022-11-03
BA.5.2.38	2022-11-03
DA.1	2022-11-03
BF.7.13	2022-11-03
BF.7.13.1	2022-11-03
BF.7.13.2	2022-11-03
XBF	2022-11-03
CA.3.1	2022-11-03
CM.7	2022-11-04
BA.5.2.39	2022-11-04
DB.1	2022-11-04
BF.33	2022-11-04
BA.4.6.5	2022-11-04
DC.1	2022-11-04
BQ.1.1.23	2022-11-04
BQ.1.1.24	2022-11-04
DD.1	2022-11-04
BE.6	2022-11-04
BE.7	2022-11-04
BE.8	2022-11-04
BA.5.11	2022-11-04
DB.2	2022-11-04
BQ.1.24	2022-11-04
BA.5.2.40	2022-11-04
BQ.1.25	2022-11-05
CQ.1.1	2022-11-05
CR.1.2	2022-11-05
DE.1	2022-11-05
DE.2	2022-11-05
CM.8	2022-11-05
DF.1	2022-11-06
XBB.1.4	2022-11-06
BF.34	2022-11-08
XBB.1.5	2022-11-08
DG.1	2022-11-09
DH.1	2022-11-09
BR.2.1	2022-11-09
BN.1.7	2022-11-10
CM.8.1	2022-11-10
CM.9	2022-11-10
CM.6.1	2022-11-10
BE.9	2022-11-12
BQ.1.26	2022-11-12
BF.7.5.1	2022-11-13
BA.5.2.41	2022-11-13
CK.3	2022-11-14
XBG	2022-11-14
BA.5.1.31	2022-11-15
XBH	2022-11-16
BW.1.1	2022-11-20
BN.1.8	2022-11-22
BQ.1.1.25	2022-11-22
CM.2.1	2022-11-22
DJ.1	2022-11-23
DJ.1.1	2022-11-23
BA.5.2.42	2022-11-23
XBB.1.4.1	2022-11-25
BA.5.2.43	2022-11-26
BN.1.9	2022-11-28
CH.1.1.1	2022-11-29
CH.1.1.2	2022-11-29
BA.5.2.44	2022-11-29
DK.1	2022-11-30
BQ.1.1.26	2022-12-01
XBJ	2022-12-01
CH.3	2022-12-01
BQ.1.1.27	2022-12-02
DL.1	2022-12-03
BA.5.2.45	2022-12-03
BQ.1.1.28	2022-12-04
BQ.1.26.1	2022-12-04

Commits

6f9337f - InfrPopGen, Sun Dec 4 15:27:20 2022 +0000 : Merge pull request #1401 from InfrPopGen/master
dd51c17 - InfrPopGen, Sun Dec 4 15:25:41 2022 +0000 : Added new lineage BQ.1.26.1 from #1369 with 57 new sequence designations, and 11 updated from BQ.1.26
16003d3 - Cornelius Roemer, Sun Dec 4 16:07:12 2022 +0100 : Added lineage BQ.1.1.28 (S:P251L) with 150 designations
add3b5a - InfrPopGen, Sat Dec 3 15:50:07 2022 +0000 : Merge pull request #1399 from InfrPopGen/master
3cc4153 - InfrPopGen, Sat Dec 3 15:48:18 2022 +0000 : Added new lineage BA.5.2.45 from #1383 with 19 new sequence designations, and 0 updated
e31f3a3 - InfrPopGen, Sat Dec 3 12:17:27 2022 +0000 : Merge pull request #1398 from InfrPopGen/master
4f711f1 - InfrPopGen, Sat Dec 3 12:15:41 2022 +0000 : Added new lineage DL.1 from #1376 with 147 new sequence designations, and 0 updated
72ee99d - Angie Hinrichs, Fri Dec 2 17:11:19 2022 -0800 : Merge pull request #1395 from rquiroga7/patch-1
242e7c2 - Cornelius Roemer, Fri Dec 2 20:51:50 2022 +0100 : Added lineage BQ.1.1.27 (S:G181R) with 50 designations
7a55e22 - rquiroga7, Fri Dec 2 11:48:37 2022 -0300 : Update BQ.1.1.25 mutations
f3ef169 - Cornelius Roemer, Thu Dec 1 19:03:33 2022 +0100 : Added lineage CH.3 (S:486P) from #1375 with 14 designations
d37a34d - Cornelius Roemer, Thu Dec 1 18:34:29 2022 +0100 : Added recombinant XBJ (BA.2.3.20/BA.5.2) with 23 designations from #1268
947e598 - Cornelius Roemer, Thu Dec 1 18:14:35 2022 +0100 : Added lineage BQ.1.1.26 (S:E471Q) with 20 designations
9a9e0ef - Cornelius Roemer, Wed Nov 30 23:40:09 2022 +0100 : Added 20 extra designated sequences for BQ.1.1.25
fa14664 - Cornelius Roemer, Wed Nov 30 23:38:35 2022 +0100 : Added lineage DK.1 (BQ.1.1.7.1, S:339N) with 10 designations
dcb449a - Cornelius Roemer, Tue Nov 29 17:47:30 2022 +0100 : Added lineage BA.5.2.44 (ORF1a:L2564F) with 900 designations
f01bae3 - Cornelius Roemer, Tue Nov 29 17:17:14 2022 +0100 : Added lineages CH.1.1.1 (S:N185D) and CH.1.1.2 (S:T883I) with 50/20 designations
71a5573 - InfrPopGen, Mon Nov 28 15:13:34 2022 +0000 : Merge pull request #1373 from InfrPopGen/master
35579c0 - InfrPopGen, Mon Nov 28 15:11:49 2022 +0000 : Added new lineage BN.1.9 from #1327 with 24 new sequence designations, and 0 updated
91d5b04 - InfrPopGen, Sat Nov 26 16:13:57 2022 +0000 : Merge pull request #1371 from InfrPopGen/master
5c20270 - InfrPopGen, Sat Nov 26 16:12:20 2022 +0000 : Added new lineage BA.5.2.43 from #1312 with 31 new sequence designations, and 0 updated designations
4c6a85b - InfrPopGen, Fri Nov 25 16:46:09 2022 +0000 : Merge pull request #1368 from InfrPopGen/master
2bb9531 - InfrPopGen, Fri Nov 25 16:44:46 2022 +0000 : Added new lineage XBB.1.4.1 from #1352 with 8 new sequence designations, and 3 updated designations from XBB.1.4
fb90126 - InfrPopGen, Wed Nov 23 20:28:34 2022 +0000 : Merge pull request #1365 from InfrPopGen/master
1f8b3b0 - InfrPopGen, Wed Nov 23 20:27:10 2022 +0000 : Added new lineage BA.5.2.42 from #1266 with 50 new sequence designations, and 0 updated designations
9dddb82 - InfrPopGen, Wed Nov 23 16:21:53 2022 +0000 : Merge pull request #1364 from InfrPopGen/master
d0dbb33 - InfrPopGen, Wed Nov 23 16:20:24 2022 +0000 : Added new lineage DJ.1.1 from #1245 with 0 new sequence designations, and 17 updated designations from DJ.1
2bef77b - InfrPopGen, Wed Nov 23 16:00:02 2022 +0000 : Merge pull request #1363 from InfrPopGen/master
89c833a - InfrPopGen, Wed Nov 23 15:57:39 2022 +0000 : Added new recombinant lineage DJ.1 from #1245 with 87 new sequence designations, and 61 updated designations from BA.5.1.25
11b0915 - Cornelius Roemer, Tue Nov 22 17:44:26 2022 +0100 : Linked BW.1.1 (S:V486A) to #1341 in lineage notes
c081af4 - Cornelius Roemer, Tue Nov 22 17:40:14 2022 +0100 : Added lineage CM.2.1 (S:F486S) from issue #1356 with 7 designations
188716e - Cornelius Roemer, Tue Nov 22 16:54:19 2022 +0100 : Added lineage BQ.1.1.25 (S:F490S) with 22 designations
9fd95c8 - Cornelius Roemer, Tue Nov 22 16:47:42 2022 +0100 : Added lineage BN.1.8 (S:A475V) with 11 designations
4374c80 - Cornelius Roemer, Sun Nov 20 19:27:38 2022 +0100 : Added lineage BW.1.1 (S:F486S) with 25 designations
ceef3f2 - InfrPopGen, Wed Nov 16 17:31:46 2022 +0000 : Merge pull request #1346 from InfrPopGen/master
6da3030 - InfrPopGen, Wed Nov 16 17:30:02 2022 +0000 : Added new recombinant lineage XBH from #1229 with 36 new sequence designations, and 0 updated designations
5a35d87 - InfrPopGen, Tue Nov 15 15:01:01 2022 +0000 : Merge pull request #1344 from InfrPopGen/master
1eeb05e - InfrPopGen, Tue Nov 15 14:59:39 2022 +0000 : Added new lineage BA.5.1.31 from #991 with 31 new sequence designations, and 1 updated designations from BA.5.1
04e9326 - Cornelius Roemer, Tue Nov 15 00:07:48 2022 +0100 : fix: Use monophyletic BA.5.2.41 designations from Usher tree
9a02ce3 - InfrPopGen, Mon Nov 14 17:34:50 2022 +0000 : Merge pull request #1338 from InfrPopGen/master
4941af7 - InfrPopGen, Mon Nov 14 17:32:32 2022 +0000 : Added new recombinant lineage XBG from #896 with 14 new sequence designations, and 0 updated designations
b336776 - InfrPopGen, Mon Nov 14 16:11:44 2022 +0000 : Merge pull request #1337 from InfrPopGen/master
504be11 - InfrPopGen, Mon Nov 14 16:09:56 2022 +0000 : Added new lineage CK.3 from #1121 with 76 new sequence designations, and 15 updated designations from CK.1
b3301b5 - InfrPopGen, Sun Nov 13 14:54:51 2022 +0000 : Merge pull request #1331 from InfrPopGen/master
41a7f39 - InfrPopGen, Sun Nov 13 14:53:32 2022 +0000 : Added new lineage BA.5.2.41 from #1328 with 30 new sequence designations, and 0 updated designations
005b1e7 - InfrPopGen, Sun Nov 13 13:01:16 2022 +0000 : Merge pull request #1329 from InfrPopGen/master
073a80e - InfrPopGen, Sun Nov 13 13:00:12 2022 +0000 : Added new lineage BF.7.5.1 from #1317 with 17 new sequence designations, and 5 updated designations from BF.7.5
41d3aec - InfrPopGen, Sat Nov 12 17:01:17 2022 +0000 : Merge pull request #1323 from InfrPopGen/master
97c2640 - InfrPopGen, Sat Nov 12 16:59:30 2022 +0000 : Added new lineage BQ.1.26 from #1315 with 15 new sequence designations, and 0 updated designations
78d95ee - InfrPopGen, Sat Nov 12 15:09:08 2022 +0000 : Merge pull request #1322 from InfrPopGen/master
0ae1ea8 - InfrPopGen, Sat Nov 12 15:07:30 2022 +0000 : Added new lineage BE.9 from #1302 with 233 new sequence designations, and 0 updated designations
c18407f - Cornelius Roemer, Thu Nov 10 15:11:36 2022 +0100 : Added lineage CM.6.1 (S:A348S) with 6 designations
606b44e - Cornelius Roemer, Thu Nov 10 15:09:37 2022 +0100 : Added lineage CM.9 (S:S256L) with 20 designations, added extra CM.6 designations
(piranha) [11:43:51] ~/repositories/pango-designation % git log --pretty=format:"%h - %an, %ad : %s"
42db19e - Áine O'Toole, Mon Dec 5 11:34:14 2022 +0000 : Update init.py
6f9337f - InfrPopGen, Sun Dec 4 15:27:20 2022 +0000 : Merge pull request #1401 from InfrPopGen/master
dd51c17 - InfrPopGen, Sun Dec 4 15:25:41 2022 +0000 : Added new lineage BQ.1.26.1 from #1369 with 57 new sequence designations, and 11 updated from BQ.1.26
16003d3 - Cornelius Roemer, Sun Dec 4 16:07:12 2022 +0100 : Added lineage BQ.1.1.28 (S:P251L) with 150 designations
add3b5a - InfrPopGen, Sat Dec 3 15:50:07 2022 +0000 : Merge pull request #1399 from InfrPopGen/master
3cc4153 - InfrPopGen, Sat Dec 3 15:48:18 2022 +0000 : Added new lineage BA.5.2.45 from #1383 with 19 new sequence designations, and 0 updated
e31f3a3 - InfrPopGen, Sat Dec 3 12:17:27 2022 +0000 : Merge pull request #1398 from InfrPopGen/master
4f711f1 - InfrPopGen, Sat Dec 3 12:15:41 2022 +0000 : Added new lineage DL.1 from #1376 with 147 new sequence designations, and 0 updated
72ee99d - Angie Hinrichs, Fri Dec 2 17:11:19 2022 -0800 : Merge pull request #1395 from rquiroga7/patch-1
242e7c2 - Cornelius Roemer, Fri Dec 2 20:51:50 2022 +0100 : Added lineage BQ.1.1.27 (S:G181R) with 50 designations
7a55e22 - ...

pango designations v1.16

What's changed:

• Added lineage CM.5.1 (S:Q675R) with 8 designations
• Added lineage BS.1.2 (S:T430I) with 5 designations
• Added lineage CR.1.1 (S:V62I) with 20 designations
• Added lineage CP.6 (S:V1264L) with 20 designations
• Added lineage CP.5 (S:C1247F) with 40 designations
• Added lineage CP.4 (S:I770V) with 20 designations
• Added lineage CP.3 (S:N460Y) with 10 designations
• Added lineage CP.2 (S:N334K) with 10 designations
• Added lineage CP.1.3 (S:G446S) with 30 designations
• Added CP.1.2 (S:K150N) with 30 designations
• Added lineage BF.7.4.2
• Added lineage BQ.1.22 (S:R346T after C26681T) with 13 designations
• Added lineage BQ.1.22 (S:R346T after C26681T) with 13 designations
• Added new lineage BA.2.9.7 from #864 with 490 new sequences
• Added new lineage CY.1 from #1247 with 3 new sequence designations
• Added lineage BQ.1.21 (S:R346S, S:Y144-) with 15 designations
• Added new lineage BF.32 from #1246 with 138 new sequence designations
• Added new BM.1.1.1 designations
• Add 15 new CJ.1 designations
• Added lineages BF.31(.1) with 900/150 designations
• Added new lineage BF.7.4.1 from #1253
• Added new lineage BN.1.3.1 from #1257
• Added lineages BQ.1.1.17-19
• Added lineages BQ.1.1.15/16
• Added lineages BQ.1.1.14 and CW.1 (BQ.1.1.14 + S:G446S)
• Added lineage BQ.1.1.13 (E:V62F and S:Y144-) with 7 designations
• Added lineage XBB.1.3 (S:A484T) with 8 designations
• Added lineage CA.6 (S:L452R) with 7 designations
• Added lineage CV.1 (BM.1.1.3 with S:L452R) with 12 designations
• Added lineage BA.5.1.30 (ORF6:D6G) with 1000 designations
• Added lineage BU.3 (S:K147N, S:N450D) with 9 designations
• Added new lineage XBE from #1246 with 104 new sequence designations
• Added lineages CM.4-6
• Added lineages BY.1.(1-2), BY.1.1(1-2).1
• Added lineages BQ.1.1.11 (S:S494P after ORF1a:P2537H) and BQ.1.1.12 (
• Added lineage BQ.1.1.11 (S:S494P) with 5 designations
• Added lineage CQ.2 (S:V445A) with 4 designations
• Added lineages CK.2, CK.2.1, CK.2.1.1
• Added lineages BN.1.2.1, BN.1.(4-6)
• Added lineages BQ.1.1.(3-10)
• Added lineage XBB.5 (S:A653V) with 4 designations
• Added lineage XBB.3.1 (S:Q677R) with 13 designations,
• Added lineage XBB.4 (S:K444R) with 2 designations
• Added lineage BQ.1.1.2 (S:D253G) with 9 designations
• Added new lineage BA.5.2.37 from #1117
• Added new lineage BA.5.6.4 from #1191
• Added new lineage BT.2 from #1192
• Added lineage XBB.1.2 (S:S640F) with 5 designations
• Added lineage CU.1 (BA.5.1.26 with S:T95I, S:T547K)
• Added lineages BE.1.4.(1-4)
• Added lineage BE.1.4 (ORF1b:V1787I) with 2500 designations
• Added lineages BF.7.8-12,
• Added lineages BF.7.7 (S:D80G) and BF.7.8 (S:T883I)
• Added lineages BF.7.(4/5/6)
• Added lineage BF.11.5 (ORF8:I121L)
• Added lineage BF.11.4 (S:S704L)
• Added lineage BF.11.3 (ORF1a:L122F)
• Added lineage BF.11.2 (S:K147N)
• Added lineage BF.11.1 (S:S1252F)
• Added lineage CA.6 (BA.2.75.2 with ORF1a:Y196H)
• Added lineage BQ.1.20 (S:A348S)
• Added lineage BL.1.4
• Added lineage BU.2 (S:V445A)
• Added lineage BQ.1.19 (S:S494P)
• Added CM.3 (S:G485D)
• Added lineage BM.1.1.3 (ORF10:A8V)
• Added lineage CA.5 (S:A260D, S:Q613H)
• Added lineage CA.4 (S:F486L) with
• [Added lineage CA.3 (N:M101I)](https://github.com/...

v1.15.1

Bump __init__.py version string correctly

v1.15

New lineages with designation date

lineage	designation date
BA.5.10	2022-08-18
BA.5.1.11	2022-08-18
XAR	2022-08-18
BA.2.75.2	2022-08-19
BA.2.76.2	2022-08-19
BA.5.2.6	2022-08-21
BA.2.75.3	2022-08-21
BA.5.2.7	2022-08-21
BF.15	2022-08-21
BA.4.8	2022-08-21
BA.2.75.4	2022-08-21
BL.1	2022-08-21
BA.5.1.12	2022-08-22
XAS	2022-08-22
BA.5.1.13	2022-08-22
BA.2.75.5	2022-08-22
XAT	2022-08-22
BA.5.1.14	2022-08-22
XAU	2022-08-23
XAV	2022-08-23
BF.16	2022-08-23
BE.1.1.1	2022-08-24
XAW	2022-08-25
XAY	2022-08-25
BE.1.3	2022-08-26
BA.5.2.8	2022-08-26
BA.5.1.15	2022-08-26
BA.5.1.16	2022-08-26
BA.5.1.17	2022-08-26
BA.5.2.9	2022-08-26
BA.5.2.10	2022-08-26
BA.5.2.11	2022-08-26
BA.5.2.12	2022-08-26
BF.17	2022-08-26
BF.18	2022-08-26
BF.19	2022-08-26
BF.20	2022-08-26
BF.21	2022-08-26
XAZ	2022-08-27
BA.4.1.9	2022-08-27
BA.5.1.18	2022-08-28
BA.5.5.2	2022-08-29
BM.1	2022-08-30
BF.22	2022-08-31
BA.2.3.20	2022-09-02
BN.1	2022-09-02
BP.1	2022-09-02
BA.5.5.3	2022-09-02
BQ.1	2022-09-02
BN.2	2022-09-03
BN.2.1	2022-09-03
BR.1	2022-09-03
BM.2	2022-09-03
BM.3	2022-09-03
BM.1.1	2022-09-03
BL.2	2022-09-03
BL.3	2022-09-03
BA.2.75.6	2022-09-03
BA.2.75.7	2022-09-03
BL.4	2022-09-03
BA.5.1.19	2022-09-04
BA.4.6.1	2022-09-05
BA.5.2.14	2022-09-06
BA.5.2.13	2022-09-06
BM.4	2022-09-07
BM.4.1	2022-09-07
BA.5.1.20	2022-09-07
BQ.1.1	2022-09-09
BS.1	2022-09-12
BA.5.2.15	2022-09-12
BA.5.1.21	2022-09-14
BA.5.2.16	2022-09-14
BT.1	2022-09-14
XBA	2022-09-14
BA.5.2.17	2022-09-15
BF.23	2022-09-15
BU.1	2022-09-16
BA.5.2.18	2022-09-17
BL.1.1	2022-09-17
BL.1.2	2022-09-17
XBB	2022-09-17
BR.2	2022-09-17
BM.1.1.1	2022-09-18
BA.4.1.10	2022-09-18
BA.5.10.1	2022-09-18
BA.2.83	2022-09-18
BA.5.2.19	2022-09-18
BA.5.2.20	2022-09-18
BA.5.2.21	2022-09-18
BV.1	2022-09-18
BW.1	2022-09-18
BM.5	2022-09-18
BY.1	2022-09-19
BM.4.1.1	2022-09-19
BF.24	2022-09-19
BA.2.84	2022-09-19
BA.2.31.1	2022-09-19
BA.5.2.22	2022-09-20
BA.2.75.8	2022-09-20
BA.5.2.23	2022-09-20
BE.1.2.1	2022-09-21
BZ.1	2022-09-21
BR.3	2022-09-21
CA.1	2022-09-21
BA.5.2.24	2022-09-22
BF.25	2022-09-22
BV.2	2022-09-23
BQ.1.2	2022-09-23
BQ.1.3	2022-09-23
XBC	2022-09-24
BA.5.2.25	2022-09-25
BA.5.2.26	2022-09-29
BA.5.2.27	2022-09-29
BA.5.2.28	2022-09-29
BA.5.1.22	2022-09-29
BA.5.1.23	2022-09-29
BA.5.1.24	2022-09-29
BA.5.1.25	2022-09-29
BF.26	2022-09-29
BF.27	2022-09-29
BF.28	2022-09-29
CA.2	2022-09-30
BA.2.75.9	2022-09-30
CB.1	2022-09-30
BL.1.3	2022-09-30
BS.1.1	2022-09-30
BA.2.85	2022-09-30
BA.5.2.29	2022-09-30
BE.4	2022-09-30
BE.4.1	2022-09-30
BE.4.1.1	2022-09-30
BE.1.1.2	2022-09-30
CC.1	2022-09-30
BA.5.2.30	2022-09-30
BA.5.2.31	2022-09-30
CD.1	2022-09-30
CD.2	2022-09-30
BA.5.2.32	2022-09-30
BA.5.2.33	2022-09-30
CE.1	2022-09-30
BA.5.1.26	2022-09-30
BA.5.1.27	2022-09-30
BA.5.1.28	2022-09-30
CF.1	2022-09-30
CG.1	2022-10-03
XBB.1	2022-10-03
BQ.1.4	2022-10-03
XBC.1	2022-10-03

What's Changed

• Added new lineage BA.5.2.6 from #870 with 65 new designations and 14 updated from BA.5.2 by @corneliusroemer in #970
• Added new lineage BA.2.75.3 from #965 with 104 new designations and 3 updated from BA.2.75 by @corneliusroemer in #971
• Added new lineage BA.5.2.7 with 59 new designations and 3 updated from BA.5.2 by @corneliusroemer in #972
• Added new lineage BF.15 from #893 with 53 new designations and 3 updated from BA.5.2.1 by @corneliusroemer in #973
• Added new lineage BA.4.8 from #670 with 49 new designations and 8 changed from BA.4 by @corneliusroemer in #974
• Added new lineage BA.2.75.4 from #935 with 14 new designations by @corneliusroemer in #975
• Added new lineage BL.1 from #944 with 27 new designations by @corneliusroemer in #976
• Added new lineage BA.5.1.12 from #902 with 56 new designations and 3 updated from BA.5.1 by @corneliusroemer in #977
• Added new recombinant lineage XAS from #882 with 45 new sequence designations, and 3 updated designations from BA.4 by @InfrPopGen in #978
• Added new lineage BA.2.75.5 from #947 with 23 new designations by @corneliusroemer in #979
• Added new recombinant lineage XAT from #885 with 74 new sequence designations, and 0 updated designations by @InfrPopGen in #980
• Added new recombinant lineage XAU from #894 with 77 new sequence designations, and 0 updated designations by @InfrPopGen in #982
• Added new recombinant lineage XAV from #911 with 59 new sequence designations, and 2 updated designations from BA.5 by @InfrPopGen in #984
• Added new lineage BF.16 from #942 with 54 new sequence designations, and 5 updated designations from BA.5.2.1 by @InfrPopGen in #986
• Added new recombinant lineage XAZ from #797 with 730 new sequence designations, and 244 updated from BA.5 by @InfrPopGen in #997
• Added new lineage BA.4.1.9 from #926 with 62 new sequence designations, and 5 updated designations from BA.4.1 by @InfrPopGen in #998
• Added new lineage BA.5.1.18 from #930 with 52 new sequence designations, and 11 updated designations from BA.5.1 by @InfrPopGen in #1001
• Added new lineage BA.5.5.2 from #938 with 446 new sequence designations, and 64 updated designations from BA.5.5 by @InfrPopGen in #1004
• Added new lineage BM.1 from #965 with 45 new designations and 8 updated from BA.2.75 and BA.2.75.3 by @corneliusroemer in #1008
• Added new lineage BA.5.1.19 from #999 with 177 new sequence designations, and 23 updated designations from BA.5.1 by @InfrPopGen in #1028
• Added new lineage BA.4.6.1 from #900 with 191 new sequence designations, and 21 updated designations from BA.4.6 by @InfrPopGen in #1033
• Added new lineage BA.5.2.13 from #959 with 66 new sequence designations, and 3 updated designations from BA.5.2 by @InfrPopGen in #1044
• Fixing typo in lineage designation by @InfrPopGen in #1045
• Added new lineage BM.4 from #957 with 10 new sequence designations, and 7 updated designations from BA.2.75* by @InfrPopGen in #1048
• Added new lineage BA.5.1.20 from #1000 with 30 new sequence designations, and 3 updated designations from BA.5.1 by @InfrPopGen in #1049
• Added new lineage BA.5.2.14 from #1002 with 9 new sequence designations, and 0 updated designations by @InfrPopGen in #1055
• Added new lineage BA.5.2.15 from #1054 with 34 new sequence designations, and 1 updated designations from BA.5.2 by @InfrPopGen in #1057
• Added new lineage BA.5.1.21 from #958 with 911 new sequence designations, and 129 updated designations from BA.5.1 by @InfrPopGen in #1064
• Added new sublineage BT.1 from #958 with 0 new sequence designations, and 188 updated designations from BA.5.1.21, and updated lineages.csv by @InfrPopGen in #1067
• Added new recombinant lineage XBA from #844 with 4 new sequence designations, and 0 updated designations by @InfrPopGen in #1068
• Added new lineage BA.5.2.17 from #1019 with 36 new sequence designations, and 0 updated designations by @InfrPopGen in #1070
• Added new lineage BF.23 from #1036 with 136 new sequence designations, and 34 updated designations from BA.5.2.1 by @InfrPopGen in #1071
• Added new lineage BA.5.2.22 from #945 with 1209 new sequence designations, and 11 updated designations from BA.5.2.21, one from BA.5.2.16, and 87 from BA.5.2 by @InfrPopGen in #1092
• Added new lineage BA.5.2.23 from #1090 with 25 new sequence designations, and 0 updated designations by @InfrPopGen in #1093
• Added new recombinant lineage XBC from #1100 with 7 new sequence designations, and 0 updated designations by @InfrPopGen in #1107
• Added new lineage BA.5.2.25 from #1111 with 25 new sequence designations, and 0 updated by @InfrPopGen in #1116
• Added new lineage BA.2.85 from #983 with 148 new sequence designations, and 0 updated designations by @InfrPopGen in...