make alpine version

.github/workflows/docker-build.yml

@@ -28,7 +28,7 @@ jobs:
         uses: docker/login-action@f054a8b539a109f9f41c372932f1ae047eff08c9
         with:
           registry: ${{ env.REGISTRY }}
-          username: nipreps-bot
+          username: cneuromod-bot
           password: ${{ secrets.NIPREPS_BOT_PACKAGES }}
 
       - name: Extract metadata (tags, labels) for Docker

Dockerfile

@@ -1,61 +1,15 @@
-# MIT License
-#
-# Copyright (c) 2021 The NiPreps Developers
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in all
-# copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-# SOFTWARE.
-
-# Use Ubuntu 20.04 LTS
-FROM ubuntu:focal-20210416
-
-ENV LANG="C.UTF-8" \
-    LC_ALL="C.UTF-8"
+FROM python:3.8-slim
 
 # Prepare environment
 RUN apt-get update && \
     apt-get install -y --no-install-recommends \
-                    apt-utils \
-                    ca-certificates \
-                    curl \
-                    netbase \
-                    vim && \
+                    curl bzip2 git && \
     apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
 
-ENV EDITOR=/usr/bin/vim
-
-# Installing and setting up miniconda
-RUN curl -sSLO https://repo.continuum.io/miniconda/Miniconda3-py38_4.10.3-Linux-x86_64.sh && \
-    bash Miniconda3-py38_4.10.3-Linux-x86_64.sh -b -p /opt/miniconda && \
-    rm Miniconda3-py38_4.10.3-Linux-x86_64.sh
-
-# Set CPATH for packages relying on compiled libs (e.g. indexed_gzip)
-ENV PATH="/opt/miniconda/bin:$PATH" \
-    CPATH="/opt/miniconda/include:$CPATH" \
-    PYTHONNOUSERSITE=1
-
-RUN conda install -y -c conda-forge -c anaconda \
-                  datalad \
-                  git-annex \
-                  hub \
-                  jq \
-                  osfclient && \
-    conda clean -y --all && sync && \
-    rm -rf ~/.conda ~/.cache/pip/*; sync
+ENV GIT_ANNEX_PACKAGE=git-annex-10.20220505-nodep_h1234567_0.tar.bz2
 
-RUN pip install datalad-osf
+RUN cd /usr/ && \
+    curl -sSL   https://anaconda.org/conda-forge/git-annex/10.20220505/download/linux-64/$GIT_ANNEX_PACKAGE | \
+    tar -xj
 
+RUN pip install datalad pytest ssh_agent_setup

Dockerfile-alpine

@@ -0,0 +1,10 @@
+FROM python:3.8-alpine as builder
+
+RUN apk update && apk add --no-cache curl bzip2 gcc libffi-dev musl-dev
+
+RUN pip install datalad pytest ssh_agent_setup
+
+FROM python:3.8-alpine
+COPY --from=builder /usr/local /usr/local
+
+RUN apk update && apk add --no-cache git openssh-client git-annex