Continue processing even if one process is crashing

[jcohenadad]

Because of #17, every time i run the pipeline it eventually crashes, which makes the addition of processes difficult: i cannot test them because the pipeline crashes before...

@agahkarakuzu is there a way to ignore crashes of a process/subject?

[jcohenadad]

for now my workaround is to rename the problematic subject as "_sub-06_ses-002_rec-dis2d_bp-cspine_T2w.nii.gz" so it is ignored...

[agahkarakuzu]

@jcohenadad you can see the error handling strategies here.

errorStrategy 'ignore'

Adding this directive to the process description (i.e. in a module) could achieve that.

[agahkarakuzu]

SCT is no longer using Nextflow, closing the issue.