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Output of non-annotated reads #48

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genericname2 opened this issue Jan 15, 2023 · 1 comment

genericname2 commented Jan 15, 2023

Hey,

Is there a flag to get an output (bam) file for all the reads that weren't annotated using the prebuilt databases?

Thanks a lot!

Owner

cougarlj commented Jan 16, 2023

Dear genericame2,

In default, COMPSRA will output the unmapped reads. If you set "-armun", the bam file will be removed to save storage.

Best Wishes,
Jiang

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