Merge pull request #28824 from hadim/gget

add ggeet and somacore

recipes/gget/recipe.yaml

@@ -0,0 +1,75 @@
+context:
+  name: gget
+  version: 0.29.0
+
+package:
+  name: ${{ name|lower }}
+  version: ${{ version }}
+
+source:
+  url: https://pypi.org/packages/source/${{ name[0] }}/${{ name }}/gget-${{ version }}.tar.gz
+  sha256: 090f81992efea5762a81dfee7385e0df9394afaef4637fbc63ee929cfb8f15cb
+
+build:
+  number: 0
+  noarch: python
+  script: ${{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  python:
+    entry_points:
+      - gget=gget.main:main
+
+requirements:
+  host:
+    - python ${{ python_min }}.*
+    - pip
+    - setuptools
+    # NOTE: the lib is being imported during the package build
+    - numpy >=1.17.2
+    - pandas >=1.0.0
+    - requests >=2.22.0
+    - ipython
+    - matplotlib-base
+    - mysql-connector-python >=8.0.32
+    - beautifulsoup4 >=4.10.0
+    - ipywidgets
+    - tqdm
+    - lxml
+  run:
+    - python >=${{ python_min }}
+    - numpy >=1.17.2
+    - pandas >=1.0.0
+    - requests >=2.22.0
+    - ipython
+    - matplotlib-base
+    - mysql-connector-python >=8.0.32
+    - beautifulsoup4 >=4.10.0
+    - ipywidgets
+    - tqdm
+    - lxml
+
+tests:
+  - python:
+      imports:
+        - gget
+      python_version: ${{ python_min }}.*
+  - requirements:
+      run:
+        - python ${{ python_min }}.*
+    script:
+      - gget ref --help
+
+about:
+  summary: Efficient querying of genomic databases.
+  license: Apache-2.0 AND GPL-3.0-only AND BSD-2-Clause
+  license_file:
+    - LICENSE
+    - gget/bins/Darwin/license.txt
+    - gget/bins/alphafold/LICENSE
+    - gget/bins/alphafold/NOTICE
+    - gget/bins/Windows/license.txt
+    - gget/bins/Linux/license.txt
+  homepage: https://github.com/pachterlab/gget
+
+extra:
+  recipe-maintainers:
+    - hadim

recipes/somacore/recipe.yaml

@@ -0,0 +1,55 @@
+context:
+  name: somacore
+  version: 1.0.26
+
+package:
+  name: ${{ name|lower }}
+  version: ${{ version }}
+
+source:
+  url: https://pypi.org/packages/source/${{ name[0] }}/${{ name }}/somacore-${{ version }}.tar.gz
+  sha256: 25d522ec93116e34d5389a2828c2547a3e25fd6e301e1b96705f885a27cdebc0
+
+build:
+  number: 0
+  noarch: python
+  script: ${{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+
+requirements:
+  host:
+    - python ${{ python_min }}.*
+    - setuptools
+    - setuptools-scm
+    - wheel
+    - pip
+  run:
+    - python >=${{ python_min }}
+    - anndata
+    - attrs >=22.1
+    - numpy >=1.21
+    - pandas
+    - pyarrow
+    # TODO from upstream at https://github.com/single-cell-data/SOMA/blob/python-v1.0.26/pyproject.toml#L19
+    # pyarrow >= 14.0.1 doesn't play well with some other PyPI packages
+    # on Mac OS: https://github.com/apache/arrow/issues/42154
+    # Remove this once we can specify a recent pyarrow.
+    - pyarrow-hotfix
+    - scipy
+    - shapely
+    - typing_extensions >=4.1
+
+tests:
+  - python:
+      imports:
+        - somacore
+      python_version: ${{ python_min }}.*
+
+about:
+  summary: Python-language API specification and base utilities for implementation of the SOMA system.
+  license: MIT
+  license_file: LICENSE
+  homepage: https://github.com/single-cell-data/SOMA/tree/main
+
+extra:
+  recipe-maintainers:
+    - hadim